FMO05141.5prime Sequence
1221 bp (1011 high quality bases) assembled on 2008-08-22
> FMO05141.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGACCAGTAT
TTGCCTTCCTGCTCCTGGCGCTCATCTGCTTCGCCAGCACTAAGTCGGAG
AGCGACTTCGAGGAAGACGACAGTGATGATTTTGCCGAATTCGACGACGG
CAATTTTTACGCTGAGCCAGCGGCCAAGAATGCAGATTCGTTCTCCGGAG
GAGCAGGATCCAGCCACGGCGAGTCCCGCGACGATCCGCCTGCCAAGGAG
CCGCGGAAGCAAGCACAAAACCAGGAGAGCGACGAGGAGGACGGCCTTGT
CGAGGATGACGATGAGTTTGAGCACTTCCAGGATGAGGAAGAGTTCGAGG
GCTACGATGGCGGAGACTCCAAGGATCCGCCCATCGACCAAAAGGTTGAG
CCAAAACTGAACATACCAAACATCCCTCTGCACTTCCGCACCCACTGGGA
CTCCTACTGGATGGAGATGCTCATGGTGGCAGGGTTGTTGGCCTACTTCG
CCAACTTCTTTGCGGGAAAGGCCAAAAACGCGCGTTTGGCGCAGCTTTGG
TTCAGTACCCACAGAGCCCTGCTGGATGAGAACTTCGCCTTGGTCGGAGA
CGATGGCAAGGCGGAGAACGAGAATCCGGGACTGATAAAGGAGAGCGAGA
GTCTTTATACTCTCTGGTGCTCCGGCAGGACCTGTTGCGAAGGCATGCTC
GTCGAGCTGAAGATGATCAAGCGACAGGATCTGGTCTCCTTGGTGGCGGG
ACTAATGCGCCCACAGCTGGACCAGGCCCACATCAAAATTGAACTCACAC
GCGGTGTAATGGATGCCTTTGTATTTGCAGTTGGTACCAAAAAGACAATT
ACCAAGCTCTTCAAAGAGTATACGGATCTGAGCAAGTTCTGTAGTCTAGT
CGGCAGCCGGAGGATCGCTACAATGTACCCACCGGCTTTGGCGTGCTCTC
GGAATTCCGAGCAACGTCCGCATCTCGAGTCACGTATATCACTGCACTTA
CAGTACAAAGCTATACGATATCTGCACATCTCGACAGTCAGTGGCCAATC
AGTCAGAGAGGGTGGCACCTCAGCAGCGAACAAGCGTGCTTCTTGAAGCT
TCATTGCGAGCACGTCGAATGAAACATTAGCCGTTATGGTGAACTTATAA
TGCACGTAAGACATCAGTCAGAGCCAAGCAAGTCGACAACGTCTCGCCGG
GGAGAAGATTCTTGAGAGAGC
FMO05141.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17593-RB | 1832 | CG17593-RB | 113..1162 | 38..1069 | 4705 | 97.7 | Plus |
| CG17593-RA | 1674 | CG17593-RA | 113..1162 | 38..1069 | 4705 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3515714..3516268 | 326..880 | 2775 | 100 | Plus |
| 2L | 23513712 | 2L | 3514984..3515278 | 38..332 | 1475 | 100 | Plus |
| 2L | 23513712 | 2L | 3516329..3516404 | 880..954 | 315 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:26 has no hits.
FMO05141.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:55 Download gff for
FMO05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17593-RA | 113..1172 | 38..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:46 Download gff for
FMO05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17593-RA | 248..1307 | 38..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:20 Download gff for
FMO05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17593-RA | 113..1172 | 38..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:20 Download gff for
FMO05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3514984..3515277 | 38..331 | 100 | -> | Plus |
| 2L | 3515720..3516268 | 332..880 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:55 Download gff for
FMO05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3514984..3515277 | 38..331 | 100 | -> | Plus |
| arm_2L | 3515720..3516268 | 332..880 | 100 | -> | Plus |
