FMO05142.5prime Sequence
594 bp (594 high quality bases) assembled on 2008-08-22
> FMO05142.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGATGCAATATCTTGT
TGTTAGCCTGGCACTCTGTGCCACAATTTGCTCTGCTGCGCAGACGCGCA
ATATGCCCATTCAAGCCATTGCCTATCTGATTGGACCCGTGCAATCGGAT
AATACCCAGGTCAAGGGCAACGTGACCTTTACGCAGAACGACTGTGGCCA
GAATGTCCATGTGCGCGTCCAGCTGGAGGGATTGAAGGAGGGCAAGCACG
GCTTCCACATTCACGAGAAGGGAGATCTGACCAATGGATGCATCAGCATG
GGTGCTCACTATAACCCCGATAAGGTTGATCACGGTGGCCCCGATCACGA
GGTGCGTCATGTTGGCGATCTGGGCAACCTGGAGGCCAACTCCACGGGCA
TTATCGACGTTACATACACGGATCAGGTGATCACCTTAACTGGCAAGCTG
GGGATCATTGGCAGGGGAGTTGTTGTCCACGAATTGGAGGATGATCTCGG
TCTGGGCAACCACACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCA
TTGCCTGTGGTGTTATTGGCATCAAGGCAAGCTTTCTAGACCAT
FMO05142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod3-RA | 896 | CG9027-RA | 107..649 | 34..576 | 2715 | 100 | Plus |
| Sod3-RB | 1040 | CG9027-RB | 251..793 | 34..576 | 2715 | 100 | Plus |
| Sod3-RE | 1228 | CG9027-RE | 107..648 | 34..575 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11381949..11382183 | 330..96 | 1160 | 99.6 | Minus |
| 2R | 25286936 | 2R | 11381663..11381893 | 553..323 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 11382249..11382311 | 96..34 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:24 has no hits.
FMO05142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:09 Download gff for
FMO05142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod3-RB | 246..796 | 29..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:48 Download gff for
FMO05142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9027-RC | 1766..2323 | 22..580 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:34 Download gff for
FMO05142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod3-RB | 246..796 | 29..580 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:34 Download gff for
FMO05142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11381568..11381594 | 554..580 | 92 | <- | Minus |
| 2R | 11381663..11381891 | 325..553 | 100 | <- | Minus |
| 2R | 11381955..11382182 | 97..324 | 100 | <- | Minus |
| 2R | 11382249..11382317 | 29..96 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:09 Download gff for
FMO05142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7269073..7269099 | 554..580 | 92 | <- | Minus |
| arm_2R | 7269168..7269396 | 325..553 | 100 | <- | Minus |
| arm_2R | 7269460..7269687 | 97..324 | 100 | <- | Minus |
| arm_2R | 7269754..7269822 | 29..96 | 95 | <- | Minus |
