FMO05143.5prime Sequence
310 bp (310 high quality bases) assembled on 2008-08-22
> FMO05143.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCACGCGACTGTCA
TCTCGGCTTTCGGGATAGTATATCTACTGTTCCTGTTCCTGGGACATCTT
TCTGCTCAAATTACCGTGAGTCCAAGCACGTTCAATCCTCTTATGGTCGA
CAGCAAGCCGGAACCCGCCACAAAAAACTCTTGGCACATTAATAATTATT
ATCCAAAAAGGTGGTTAATAAATATGAATAGTTCCGATAAGAAACTCAGA
CAATCCTACGATTACCGCCCGCTGCACAATCCCCTCTATGGGGCAAGCTT
TCTAGACCAT
FMO05143.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33494-RB | 849 | CG33494-RB | 55..312 | 35..292 | 1290 | 100 | Plus |
| CG33494-RA | 751 | CG33494-RA | 55..312 | 35..292 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25494215..25494411 | 231..35 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 25494018..25494080 | 292..230 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:59:04 has no hits.
FMO05143.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:17 Download gff for
FMO05143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33494-RA | 51..315 | 27..296 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:49 Download gff for
FMO05143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33494-RA | 51..315 | 27..296 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:48 Download gff for
FMO05143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33494-RA | 51..315 | 27..296 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:48 Download gff for
FMO05143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25494015..25494078 | 232..296 | 96 | <- | Minus |
| 3R | 25494215..25494415 | 27..231 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:17 Download gff for
FMO05143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21319737..21319800 | 232..296 | 96 | <- | Minus |
| arm_3R | 21319937..21320137 | 27..231 | 98 | | Minus |
