FMO05144.5prime Sequence
1238 bp (1051 high quality bases) assembled on 2008-08-22
> FMO05144.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACTCATTCGC
ACTTTATCAAGATCCTTTGCGTGGTGAGGTCCTAAAAATATCGGGAAATC
AGATCGGCATGAGTGTGGTTCCCCGGAAACTTAGTTTCTCGGATCCGATT
CTTTTGCGGCACATCCTCTGTCTGGTGATAGTGGTGCACAACAGTTTTCA
TCTCATCCTCTGTTGCAGGCAGTTGAAATTGTGCAAAAGGACTTCCGTTC
CGCCGAAGCAAATGGAGGGCATTTTGTCGCAAGAAGCCTTTCAGGCCTCC
AAGGATAAACAGCTTCATGCCTCATCCCTTGAGATATTCAATATAGCAAT
AGATACATTATATAGCTGCCTTGATCTGTATCTTTGCACTCTGGCTTTCC
TCTGGAAATTGACGGTAGGTTGGTATCACTATGCGGACAGCACTTGGCTG
AATGTGACATTTATGACTGTATTTTCAACGTACTTGGTTGTCCGGAAGTT
GCCATCACTGTTTTACGAGAAATTGGTCCTGGATCCGCGATACAATGTGG
ATCCTGAAAAGACGCCGCCCTTGTTGGGTTTGATTTGTGCGCTGGTTTTT
GTCGTCGTTTTCCTACAGGTTGCCGTCATTCCGCTGACTGCGATTTTCAT
GGCTATTCATATGTTAAGCGAGTGGTATTTCACACTATTCGTTTGGCTGG
GTCTGGTGGGTTTGTCCGTACTGGTATTGGCATTTGTTGGACTGTTTGGA
GTGCCCTGTTTGGGCAAGAGTCGCAAAATGAATAGTACCGATATGGATAA
TAGCCTGAAGCGGTATTGGACGACTTTATTTTCCCGGCCGGGTCTATATG
GTTCACACCTTCCATGTGGGTCGTCCGACGGCCTGGGTAATGGGATGCTG
CTGTTGCCTGCGTTTAGATATCCACGATATCTGAAGTGGAACCGTGAATT
TAGCTCGATGATTTCGACTGGGGTCAGATGGGTGCTGGTCTGAATGATGA
GCAGTGGCTGCTTTGTTGCCCATCAACTGGCCCATTGCAACTGTGGCATG
TGGCAAGGACTGCATTGATTTACTTTTATCTCTTGATTATTACTATCTCG
GATCTGTAACGGGTGAATACGTTGAGCGGGCGCGGCTTACGACTCATGCA
GTTCGTGCTTGACTGGATAAAGATCTATGCACTTCTGATTCATGGATGGT
CTTTTGTAAGCCATTGAAGACGCGCGAAGCACTAGTGT
FMO05144.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7573-RB | 1523 | CG7573-RB | 51..1154 | 37..1124 | 5070 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11312504..11312985 | 616..1087 | 1915 | 97.5 | Plus |
| 3L | 28110227 | 3L | 11312125..11312452 | 292..619 | 1640 | 100 | Plus |
| 3L | 28110227 | 3L | 11311797..11312055 | 37..295 | 1295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:58 has no hits.
FMO05144.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:51 Download gff for
FMO05144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7573-RB | 51..1139 | 37..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:51 Download gff for
FMO05144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7573-RB | 35..1123 | 37..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:48 Download gff for
FMO05144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7573-RB | 51..1139 | 37..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:48 Download gff for
FMO05144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11311799..11312054 | 39..294 | 100 | -> | Plus |
| 3L | 11312128..11312451 | 295..618 | 100 | -> | Plus |
| 3L | 11312507..11313013 | 619..1110 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:51 Download gff for
FMO05144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11304899..11305154 | 39..294 | 100 | -> | Plus |
| arm_3L | 11305228..11305551 | 295..618 | 100 | -> | Plus |
| arm_3L | 11305607..11306113 | 619..1110 | 96 | | Plus |
