FMO05146.5prime Sequence
803 bp (803 high quality bases) assembled on 2008-08-22
> FMO05146.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGCTGCACATGGAAATC
ATCCAATTCAGACAACGTCACACGATGTGGAACTTTTTGGATCGCTTCGA
ACTGGACGCAGAGGATCGACAGTGCCTCGAGAGATTACAGCAGCCGGCGG
AAAGATCCACCGATAAGAGCTTCACACCAAAGGTCAGTTTGCGTTATCAG
CCCGCGATCGTCCCATCATTCCTGTCTATTGGGATTGCGGTGACTATCTG
CCTGGGATCTGCCCTCGCCGCTCCGCAATCCTCCTGCATCATGTGCGACA
AGGAGGACCTGCGACCACGACTTCCTCCCTACAGCGACAGCTACGAGGAG
TACACCTTCGACCACCAGGTGACCCAGCAAGCGGCCCTGGAGTCCATTCA
GAAATTTAACGGCTCAAGAGGTCAGAACAATGCCTGCAGTTCAATCAAGT
GCCCACCGAATACACCAAAGTATTGCCTAGGCGGTCAGTTTATCAACGAC
CATTGCTGGTGCGAACTGCAACACAGAGAAGAGGGCCTGCCCTATGTGCC
TCACGTGTGCTTCGCGGATCAGAAGGTGCACACATCATCCGTGGAATCCT
GCTTCACATTCGTCCAGGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATC
AAGAAGTGGCGTCACATTTCCGGCAGTTCTCGTGGCCAGCACGTGCCAAA
TGTGTTAGTGCTACTAATATTGAACCTGCTTTCTGCATTCAGTATACTCA
CCTGCCGAAGAAGGAGACGAATATTTTGGCAAAGCGCAAGCTTTCTAGAC
CAT
FMO05146.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5910-RB | 1148 | CG5910-RB | 209..961 | 33..785 | 3765 | 100 | Plus |
| CG5910-RA | 1063 | CG5910-RA | 124..876 | 33..785 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20446020..20446401 | 33..414 | 1910 | 100 | Plus |
| 3L | 28110227 | 3L | 20449508..20449636 | 530..658 | 645 | 100 | Plus |
| 3L | 28110227 | 3L | 20450266..20450393 | 658..785 | 640 | 100 | Plus |
| 3L | 28110227 | 3L | 20446746..20446819 | 415..488 | 370 | 100 | Plus |
| 3L | 28110227 | 3L | 20446877..20446922 | 486..531 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:49 has no hits.
FMO05146.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:34 Download gff for
FMO05146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5910-RA | 118..888 | 27..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:38 Download gff for
FMO05146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5910-RA | 118..888 | 27..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:44 Download gff for
FMO05146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5910-RA | 118..888 | 27..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:44 Download gff for
FMO05146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20446014..20446401 | 27..414 | 99 | -> | Plus |
| 3L | 20446746..20446819 | 415..488 | 100 | -> | Plus |
| 3L | 20446880..20446922 | 489..531 | 100 | -> | Plus |
| 3L | 20449510..20449635 | 532..657 | 100 | -> | Plus |
| 3L | 20450266..20450405 | 658..798 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:34 Download gff for
FMO05146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20442610..20442735 | 532..657 | 100 | -> | Plus |
| arm_3L | 20443366..20443505 | 658..798 | 97 | | Plus |
| arm_3L | 20439114..20439501 | 27..414 | 99 | -> | Plus |
| arm_3L | 20439846..20439919 | 415..488 | 100 | -> | Plus |
| arm_3L | 20439980..20440022 | 489..531 | 100 | -> | Plus |
