FMO05148.5prime Sequence
1211 bp (519 high quality bases) assembled on 2008-08-22
> FMO05148.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCAATGAGAG
CGCTCATCTTTCTGGCCCTCGCCACTCTGGTGGCTGGCGAAGGTCTTCGG
CTTCCGGACCAGCAGTCGTCCAACAACATCCAGCAAGTCTACGCACCGCA
GCCACCGGCTCAGCAGATCCAGCAACCCCAGCAGCAACAACAGTTTCCAC
AGGCACAGCAGCCAGGAGTTGGCGAGGAACGCGGACGCTCCTCCCTGCTC
AGCATCTTTGGCCTGGGCAACGACAACGATCCCTTCCTGGCCAGGACCAA
CAGCAACTGCCTCGGCGGCGACCTCTCCGAGTGCTTCAAGACTCAGGCGC
TCAACACCTTCGACGAGATCTTCTTCAAGGACCAGTACAAGCTCTCCGAC
TTTGCTCGTGTGGTGCGACTGCCAGAAACCCAGCAGAGGTCCTTGCTGCA
GGGAGCCATTCGAGTACTCCGAGGAGCCACGTGGCGACGACGACAAGTGG
AAATCAGCTGCTGAAAATATGAACTCCCGAAAGGGCCGAAACGCTTCATC
AAGTCCCCGGGTTCTAAAGGGCAAGGTGGCCCCGAGGAAACCCCCCGAAA
GCCCGGGCGTTTTAAAGCCCGCCTTCCTCCGAAAACAAATTTGATGGGGA
AATTGACCTTCTTTGGTGGAGGGACGGGGGGGTTGGACTTTTCCCGGGAA
AAAAATTAAAAAAAAAAAATTTTCCCCGGGGGGGGGGGGGAAAAAATTTT
CAGGAGAATGGGGGGTTTTTTGCGCTTTCCTCTGGGAAACGGGGGCCAAA
AAAAAACTTTGGGTTGGCCCTTTTTGCCCGCGCGGTTTTCCACATTTTAA
ATGGCGCCCCCCCGGGGGGGGTGGGGAGAACATTTCTGGAGAGACTTCGT
GTGTTTTGTGGGAAAAACACCTCTCCCCACACACACCCCCGGGGGGGGGG
GGTGCTCCTATTCATCCCCCAATTATTTTTGATTGCGCGGTGTTGCGTCT
CTTCTTTACGGAGAACAATTGTCTTCTCTCCACTCACTATAATATGAATA
AACCGCGAGCGTCGGCGCGAGGTGGGGAGGTGATGTATATCACCTACCTT
GCTTGTCCGTGCGAGCGGGCACTAGTACTAGTGAGTGAGAGAGCAGGTAT
TGTTCTACCAATCCGCGAGACACACAACACACCAGAGTCGACCTTCTTCT
TCCGTTTACCG
FMO05148.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi2-RC | 1391 | CG1148-RC | 106..714 | 37..659 | 2450 | 94.4 | Plus |
| Osi2-RA | 1474 | CG1148-RA | 189..797 | 37..659 | 2450 | 94.4 | Plus |
| Osi2-RB | 1449 | CG1148-RB | 164..772 | 37..659 | 2450 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6211461..6211815 | 37..391 | 1775 | 100 | Plus |
| 3R | 32079331 | 3R | 6212093..6212216 | 391..516 | 515 | 97.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2517 | 106..310 | 168 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6886 | 121..214 | 160 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6865 | 121..211 | 144 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6833 | 108..212 | 139 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6815 | 121..212 | 135 | 64.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1150 | 145..214 | 134 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2393 | 131..214 | 132 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6585 | 172..225 | 125 | 74.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1160 | 108..212 | 120 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6934 | 98..232 | 119 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2469 | 161..322 | 118 | 54.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3330 | 142..212 | 114 | 63.9 | Plus |
FMO05148.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:42 Download gff for
FMO05148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi2-RB | 159..690 | 31..570 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:12:40 Download gff for
FMO05148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi2-RA | 180..715 | 28..570 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:00 Download gff for
FMO05148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi2-RB | 159..690 | 31..570 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:00 Download gff for
FMO05148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6211450..6211814 | 20..390 | 97 | -> | Plus |
| 3R | 6212093..6212203 | 391..502 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:42 Download gff for
FMO05148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2037172..2037536 | 20..390 | 97 | -> | Plus |
| arm_3R | 2037815..2037925 | 391..502 | 98 | == | Plus |
