FMO05152.5prime Sequence
945 bp (822 high quality bases) assembled on 2008-08-22
> FMO05152.5prime
ATAGCATACCTTATACGAAGTTATCAGTCGACATGAATATAATGGGAGCT
GGAGCTGTGCAGCTCCTCCTTTTAATAGCCCTGGTTTTCCTAAAGGTACA
GGGCCAACCACATTTACTAGATCCCCAGTGCGTTACAGCCAGATCTGAGC
CGGGTCTATATCGTGTGATCAATGGCAAGCCAGCGGACTTATTCTCCAAT
CCCTGGATGGTGATAATCATCGAACGTGGGATGATGAAGTGCGGAGGATC
GCTCATCACGCCACGATACGTTCTGACGGCTGCCCACTGTAAAAGTGAAA
CCAAAAGTCAATTGACAGTGCGTTTGGGTGATTACGACGTGAATCAGGCC
GTCGATTGCTCCAGTTATGGCTGCATTCCACGGCCCAGGGAAATCAATGT
GACCAGAACTTATGTGCCCAGTCATTACACTAACTTTCGTAAGAATGACA
TAGCTCTGCTCAGACTAGAGACAACAGTACAGTATGGAGATAACATAAGA
TCGATCTGTTTGCTAATGGGAGACTACACCTGGTCGTCAAACATACTGAA
AAATCTTTGTCAAGTTCAATACCACCGGATGGGGACGCACTGAATCCCGC
ATAAACAGCCCCCGTCCTGCAGCAAGCATCCTTGACGCATCACCACCTCA
GCTACTGTGCCCAAGTCTTTGGCAAACAACTGGACAAAAGCCACATCTGC
GTAACTAGCAGCACTGGTTCCACTTGCCAGGGTGATTCGGGTGGACCCCC
TAACTGCGAGGGTACGGATTGGATCGGATAGAATAGTGATACTCTTCGGG
GTGGTCAGCTATGGTGCGGTTCACTGCTTTGGCCCTACTGTCTACACAAC
GTCATTCCCTTTGCTGACTGGGATCGATTAATACAAAAAAAATGCAGCTT
TCTTGACATTCGTTGGGGCCCCGGGCCCGGTTAGTGGTCATATCT
FMO05152.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30287-RA | 955 | CG30287-RA | 6..864 | 33..892 | 4005 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21537007..21537392 | 871..484 | 1610 | 96.7 | Minus |
| 2R | 25286936 | 2R | 21537778..21538010 | 265..33 | 1165 | 100 | Minus |
| 2R | 25286936 | 2R | 21537436..21537615 | 493..314 | 885 | 99.4 | Minus |
| 2R | 25286936 | 2R | 21537667..21537716 | 314..265 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:17:33 has no hits.
FMO05152.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:26 Download gff for
FMO05152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 2..856 | 31..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:00 Download gff for
FMO05152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 1..842 | 42..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:40 Download gff for
FMO05152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30287-RA | 2..856 | 31..884 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:40 Download gff for
FMO05152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21537779..21538010 | 33..264 | 100 | | Minus |
| 2R | 21537440..21537615 | 314..489 | 100 | <- | Minus |
| 2R | 21537002..21537386 | 490..877 | 96 | <- | Minus |
| 2R | 21537668..21537716 | 265..313 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:26 Download gff for
FMO05152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17424507..17424891 | 490..877 | 96 | <- | Minus |
| arm_2R | 17424945..17425120 | 314..489 | 100 | <- | Minus |
| arm_2R | 17425173..17425221 | 265..313 | 100 | <- | Minus |
| arm_2R | 17425284..17425515 | 33..264 | 100 | | Minus |
