Clone FMO05153 Report

Search the DGRC for FMO05153

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:51
Well:53
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13044-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05153.5prime Sequence

519 bp (499 high quality bases) assembled on 2008-08-22

> FMO05153.5prime
TCGTATAGCATACATTATACGAAGTTATCAATCCACATGTTCAAATTGTT
CGTTCTCGCTGCTCTTTTGGCCGTGGCCGCCGCCAAGCCCGGTCACCTGG
CTGCTGCTCCTCTGGTCTACAGCGCTCCCGCCACCACCACCGTCGTCCAG
GAGCCCGTTCTGGCCAAAGTGGGTGCTGTTGTGAAGAGCGTGCCCACCGC
CGTGTCCCACCAGAGCCTGACCCAGGTGCACAGCACCCCCGTGGTGGAGG
ATGTGGTGGCTCCCGTGGTCAAGACCACCGCTGTCCACTCCGCTCCCGTG
TTGGCCGCCGCACCCATTGTGAAGACTTTGGCTCCCGTCGCCTACTCTGC
TCCTCTGGCCTACTCCGCCCCGGTGGCCTACTCCTCGTATGCCGCTCCTC
TGACCTATTCCGCACCGGTGGCCTAATCGGCTCCCCTCTCCTACACCGCC
CCAACTCCCCTGCTGCACCACGCCCCTCTGACCTACGCCGCTGGCTCCTG
GGCAAGCTTTCTAGACCAT

FMO05153.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-RA 624 CG13044-RA 66..530 37..501 2280 99.4 Plus
CG13043-RA 646 CG13043-RA 185..327 139..278 290 81.1 Plus
CG13063-RA 544 CG13063-RA 46..292 35..278 240 73.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16302584..16303037 501..48 2225 99.3 Minus
3L 28110227 3L 16305544..16305686 278..139 245 79.7 Minus
3L 28110227 3L 16306779..16306906 107..234 205 77.3 Plus
Blast to na_te.dros performed on 2014-11-28 23:27:48 has no hits.

FMO05153.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:24:39 Download gff for FMO05153.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 66..533 37..505 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:02 Download gff for FMO05153.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 48..515 37..505 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:55 Download gff for FMO05153.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 66..533 37..505 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:55 Download gff for FMO05153.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16302581..16303036 49..505 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:24:39 Download gff for FMO05153.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16295681..16296136 49..505 98 <- Minus