FMO05154.5prime Sequence
1248 bp (962 high quality bases) assembled on 2008-08-22
> FMO05154.5prime
TCGTATAGCATACATTATACGAAGTTATCAATCGACATGGCCTTCATGCC
GTGCTTCTATGTGCCCAAGCGGATTAACCTGGCGATCATGCTCTTCATGG
CCTGCCTCCTCAGCTACATGATGCGAGTGAATCTCTCGATCAACATCATC
GCCATGGTGGAGGACACGAGCAGCCACGAGAATGGAACGGAGGTGGAGGC
ACTGCCCGATTATGGACCGCGCTACAACTGGACGCAATCGGATCAGGCTC
TGCTGCTGGGTGCCTATTTCTATGGCTATATGATCACCTCACTGCCCGCC
GGCACTTTGGCCGAGATGCTGGGAGCCAGAAATGTGGCAGGTTACAGTTG
CCTGGTGGCCGGCATCCTGACAGCTCTAACTCCGGCGGCAGCTGCCTGGG
ACAAATATGCGGTGTTTGCCGTGCGTTTCTTGATCGGCTTCCTCAACGGT
GTCGTGTATCCGTGTTGCCACAGCCTTGTTTCCAAGTGGTCGCCTCCGGA
TGAGAAGGGCAAGTTTGTGGCCTCGCTGATGGGTGGCACTTTTGGCACCG
TCATCACATGGCCCATTAGCGGTGTGATCATCGAGAATCTGGGCTGGGAT
TGGGCCTTCTACATTGTGGGCATATTCGTGCTGGTGGTGGTCGCTATATG
GTTCTACCTTGTGGCAGATACTCCTGCCCAGCACAGTACGATCAGTCTGA
AGGAGCGGGAGTATATCGAAAGCAGCTTGGGCGACACTCTGAGCAACAAG
AAGAAGTGGCCACCATACAAGGAGCTCGTCCTGTCGCTGCCCTTCTGGTC
GCTCATGATGCTCCACTACGGCAGCATGTGGGGTCTGTTCTTCCTGATTA
CGCCACGCCCAAGTTCTTGAGCGAGGTCCTGGGCTTCAATCTCTCGTCCG
CTGGCTTCCTTGTCCAGCCTGCCACATGTGCACGTCTGCTCTGCGCTTCA
GTTTTGGCGCGTGTCGGATTGCATACGTCGACGTGCCTGGTTGTCGTGAC
CGCATGCGCAAGCCTTCTGCTGCCTTCACATCTGCCGCGTCATGCTGATC
ATCTGACCTACTTAGTCGCGATCCCTATGTGAGCATGCATATGAACATTC
GCCTGGCTTCACGACTGCACCGCCTTCGATTGCCACTTCAGATCTTACCT
ATAGCTGCACCCCTAATGGCTTAACGTGATAGACCCGCCCGACTCTTGCC
CTTGTATGTGGCGACCTTACAAAGCGGAAACACTCCATCACTGACACT
FMO05154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9864-RB | 1673 | CG9864-RB | 158..1220 | 33..1081 | 4825 | 97.8 | Plus |
| CG9864-RA | 1638 | CG9864-RA | 123..1185 | 33..1081 | 4825 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20249114..20249656 | 753..211 | 2715 | 100 | Minus |
| 2R | 25286936 | 2R | 20248808..20249055 | 996..752 | 935 | 96.4 | Minus |
| 2R | 25286936 | 2R | 20249747..20249901 | 210..56 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:29 has no hits.
FMO05154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:15 Download gff for
FMO05154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9864-RA | 123..1201 | 33..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:04 Download gff for
FMO05154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9864-RA | 97..1175 | 33..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:37 Download gff for
FMO05154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9864-RA | 123..1201 | 33..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:37 Download gff for
FMO05154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20248774..20249053 | 754..1025 | 95 | <- | Minus |
| 2R | 20249114..20249656 | 211..753 | 100 | <- | Minus |
| 2R | 20249747..20249901 | 56..210 | 100 | <- | Minus |
| 2R | 20250208..20250230 | 33..55 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:15 Download gff for
FMO05154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16136279..16136558 | 754..1025 | 95 | <- | Minus |
| arm_2R | 16136619..16137161 | 211..753 | 100 | <- | Minus |
| arm_2R | 16137252..16137406 | 56..210 | 100 | <- | Minus |
| arm_2R | 16137713..16137735 | 33..55 | 95 | | Minus |
