FMO05156.5prime Sequence
1224 bp (989 high quality bases) assembled on 2008-08-22
> FMO05156.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGAAAAGGTG
GAACTACTGGCCCAGGCCAGCATGAATGGCCAACAGAATGATACGCGGAA
GGTGCGCAAATCACCGGAATTTCAGCCCGGCGTTATCTCCCGCGAACGCA
GCTTTGTGCGCACCTCAAATCAACAGAATATCAACAAACGGCGAAGTCTG
GCTTTCAACGTACCTGGCAATCAGACGGGACAGATGAGGGGCAAACCAGC
CATGGATATCTACAGGCCTCCCAATGTGCGCGGAGAGCTAGCCGCTCCAG
CCGGTGGTGTCGGTGGTGATGGTCCGAATGGTGCTATCGGTGGTGTCGCC
AACAAGCTGAACGTCAATGCCCAGGAGTTCACAATGACAACCAGCTCCGG
GGCACCGGCCGAGGCACTCGGCAACCGTTCGTCGCTAATACTTCCGCTCA
CCAATGGACCCGGAGTGGGAGTTGCACCGGGTTTGGGTCCGTACGGAAAC
GTGAATCGCCGCCAGGCCGGACACTCCCTCGGCAACATGCCGGGCTTGAA
GGCCAACCACCGGTCGATCCTGGTGACGTATCCAATCAATACCGGTGCCC
TCAGCGGTCAGCTGCCGCTAATGAACTCGCCATCCAGTGGAAATATACTT
CACACAACAAATCGTGTAAAGTTTGCACCTGAGCCCCGAGGTCACAAAGT
GGCTTCGCATAATCAGTTTGGTCAACTAAACAACAACTATGCTCAGCCTT
ATCAGGCGAATATTAATGGAGTAGATCCTTACATGAATGGAAATGCACTG
CAACGCTCCAAGTCGTTGTCGTCGGCGGATGCCCTTACTCGTGGAATGGC
CGGATTGGACTAGGTTTGGCAACGAGTGCCGACTAGGACAGTTCACGCCA
GAGATCCAGGCGCTTATTGACACGGCCCTGAGATCCCATAAACTGAACTC
TCGCTGTCTCATGAACTGACATCGCAGTCATAAACGCGCGTGAAAGTCGC
GTTTGCTCTGCATATCACGACTGTGTTCTGACATCATGCCCGGAGCGAGA
CGTTTCTCGAGGCGCTCCTCAACCATGCGTCATGTACAGAGCGTGAAACT
GTTGTTTGCATCAGGCATGATCCCCTCCGTTCGATCATGCTTAGGCTTCT
TACGGATGTTTGACCTGAGCCGGATCAGTCGCCCCAAGGCCTCTCGCCAG
TACGCTATTTCGTCTCCAAGTTTT
FMO05156.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13124-RH | 3084 | CG13124-RH | 1214..2319 | 36..1109 | 4705 | 96.7 | Plus |
| CG13124-RG | 3137 | CG13124-RG | 1267..2372 | 36..1109 | 4705 | 96.7 | Plus |
| CG13124-RF | 2977 | CG13124-RF | 1107..2212 | 36..1109 | 4705 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9904425..9904758 | 978..654 | 1260 | 96.7 | Minus |
| 2L | 23513712 | 2L | 9904827..9905053 | 653..427 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 9905138..9905291 | 427..274 | 770 | 100 | Minus |
| 2L | 23513712 | 2L | 9906033..9906173 | 176..36 | 705 | 100 | Minus |
| 2L | 23513712 | 2L | 9905875..9905974 | 273..174 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:35 has no hits.
FMO05156.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:18 Download gff for
FMO05156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13124-RF | 1103..2181 | 28..1085 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:08 Download gff for
FMO05156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13124-RB | 1196..2274 | 28..1085 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:41 Download gff for
FMO05156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13124-RF | 1103..2181 | 28..1085 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:41 Download gff for
FMO05156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9904302..9904758 | 654..1085 | 93 | <- | Minus |
| 2L | 9904827..9905052 | 428..653 | 100 | <- | Minus |
| 2L | 9905138..9905291 | 274..427 | 100 | <- | Minus |
| 2L | 9905875..9905971 | 177..273 | 100 | <- | Minus |
| 2L | 9906033..9906177 | 28..176 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:18 Download gff for
FMO05156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9904302..9904758 | 654..1085 | 93 | <- | Minus |
| arm_2L | 9904827..9905052 | 428..653 | 100 | <- | Minus |
| arm_2L | 9905138..9905291 | 274..427 | 100 | <- | Minus |
| arm_2L | 9905875..9905971 | 177..273 | 100 | <- | Minus |
| arm_2L | 9906033..9906177 | 28..176 | 97 | | Minus |
