FMO05163.5prime Sequence
560 bp (560 high quality bases) assembled on 2008-08-22
> FMO05163.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAATCAACACGC
AAAGTAGTTGGGATTTTTTTGGCCACCTGCCTGCTGCCTTTCACCGTTCT
ACAAAATGTTGCGGCACAAGGAAGTTGTAGGAATCCCAACCAGAAACAGG
GACAATGTTTGTCCATATACGACTGTCAAAGTCTGCTTTCCGTGATTCAG
CAGTCTTATGTCAGCCCGGAGGACAGAACCTTTCTTCGAAACTCACAGTG
CCTCGATGGAGTAGGTCGCCAGCCATATGTTTGCTGTACAAGTGATCGCA
GCTTTGGATCCCAGGAGGCCACCTCCGCAGCCCCTCCTCCAACGACTACC
AGTTCAAGTTCACGAGGTCAAGACGGTCAAGCGGGTCTGGGCAACCTGCT
GCCCTCGCCACCCAAGTGCGGGCCCCACTCCTTCAGCAATAAGGTCTATA
ATGGCAACGACACTGCTATTGACGAGTTCAACTGGATGGCACTGCTTGAG
TACGTGGATAGGGACGGCGGGAACTCAGTTGCGGTGGCAGTTGCAAGCTT
TCTAGACCAT
FMO05163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sp7-RF | 1565 | CG3066-RF | 156..666 | 36..542 | 2485 | 99.2 | Plus |
| Sp7-RE | 1418 | CG3066-RE | 156..666 | 36..542 | 2485 | 99.2 | Plus |
| Sp7-RA | 1851 | CG3066-RA | 589..1099 | 36..542 | 2485 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7762007..7762394 | 124..511 | 1940 | 100 | Plus |
| 3R | 32079331 | 3R | 7761187..7761276 | 36..125 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:54 has no hits.
FMO05163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:43 Download gff for
FMO05163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp7-RA | 583..1099 | 28..542 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:14 Download gff for
FMO05163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp7-RD | 561..1073 | 28..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:42 Download gff for
FMO05163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp7-RA | 583..1099 | 28..542 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:42 Download gff for
FMO05163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7761181..7761274 | 28..123 | 95 | -> | Plus |
| 3R | 7762007..7762393 | 124..510 | 100 | -> | Plus |
| 3R | 7762461..7762492 | 511..542 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:43 Download gff for
FMO05163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3586903..3586996 | 28..123 | 95 | -> | Plus |
| arm_3R | 3587729..3588115 | 124..510 | 100 | -> | Plus |
| arm_3R | 3588183..3588214 | 511..542 | 100 | | Plus |
