FMO05164.5prime Sequence
755 bp (755 high quality bases) assembled on 2008-08-22
> FMO05164.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTTTCGTAGCA
CGCTCACTGATTCGCAATGTGCCGCTGATGGGCAAGGCCATCCTGAGTCA
GCAGAAACAGATTGCCGCCCGCCTCCTGCATCAAACCGCTCCCCTTGCGG
CAGTCCGCGTCCAGCAACCTGCTCCCGATTTCAAGGGTCTGGCTGTGGTG
GACAACAGCTTCCAGGAGGTTAAGCTGGAAGACTACAGGGGCAAGTACCT
GGTGCTCTTCTTCTACCCACTGGATTTCACATTCGTTTGCCCCACTGAAA
TTGTTGCATTTAGCGAGAGGATCAAGGAGTTCCATGACATTAACACCGAG
GTTCTGGGCGTTTCCGTGGACTCCCACTTCAGCCATCTCACCTGGTGCAA
TGTCGACCGCAAGAACGGCGGAGTGGGCCAGCTGAAGTACCCGCTCCTCT
CCGATTTGACCAAGAAGATCTCTGCCGACTACGATGTGTTGCTGGACAAG
GAGGGCATCTCGCTGCGCGGCACCTTCATCATTGACCCCAATGGCATCCT
GCGCCAGTACTCCATTAATGATTTGCCCGTGGGCCGATCCGTCGACGAGG
TTCTGCGCCTGATCAAAGCCTTCCAGTTCGTCGAGCAGCACGGAGAAGTC
TGCCCGGCCAACTGGAATCCCAACTCGAATCCGGCTACCATTAAGCCCGA
TGTGGAGGAGTCCAAGAAGTACTTCAGCAAGCACGGCGCAAGCTTTCTAG
ACCAT
FMO05164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prx3-RA | 1017 | CG5826-RA | 144..845 | 36..737 | 3480 | 99.7 | Plus |
| Jafrac1-RE | 976 | CG1633-RE | 185..249 | 231..295 | 220 | 89.2 | Plus |
| Jafrac1-RD | 1080 | CG1633-RD | 289..353 | 231..295 | 220 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17545394..17545853 | 737..278 | 2285 | 99.8 | Minus |
| 3R | 32079331 | 3R | 17545910..17546051 | 277..136 | 695 | 99.3 | Minus |
| 3R | 32079331 | 3R | 17546183..17546249 | 135..69 | 335 | 100 | Minus |
| X | 23542271 | X | 13331203..13331267 | 231..295 | 220 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:28 has no hits.
FMO05164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:04 Download gff for
FMO05164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prx3-RA | 144..845 | 36..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:16 Download gff for
FMO05164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prx5037-RA | 122..823 | 36..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:05 Download gff for
FMO05164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prx3-RA | 144..845 | 36..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:05 Download gff for
FMO05164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17545394..17545853 | 278..737 | 99 | <- | Minus |
| 3R | 17545910..17546051 | 136..277 | 99 | <- | Minus |
| 3R | 17546183..17546249 | 69..135 | 100 | <- | Minus |
| 3R | 17546356..17546388 | 36..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:04 Download gff for
FMO05164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13371116..13371575 | 278..737 | 99 | <- | Minus |
| arm_3R | 13371632..13371773 | 136..277 | 99 | <- | Minus |
| arm_3R | 13371905..13371971 | 69..135 | 100 | <- | Minus |
| arm_3R | 13372078..13372110 | 36..68 | 100 | | Minus |
