FMO05165.5prime Sequence
1267 bp (1008 high quality bases) assembled on 2008-08-22
> FMO05165.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGAGACCAAAGAG
AAGGATTTCAAGCGGGCCAAGACCGTGCGCACCGAATATGTGGACGGTGT
GGACGAGGTGCAGCGTTGGCTGCTCCAGGCAGAGGTGCAGGTGCAGGAGA
GAAGCCTCACACCCACACAGATGAAGGAGCTGCTGCAGCGCATTAACCAC
GAGATCACCGCCATCTACGAACGCTTCACCCTGGTCAAGACCAACGGTCA
GCTGATCATCGAGAACTGTCGCAACAGCGAGGAGAAGACGCTGGTGCAGA
CGACCATCGATCAGTTGGCCGCATCGCTGGCCCAGGTACGCGGTTGGCTG
GATGAGAAGAAGCAGGCGGTGGGCGATAGTCTGGACGCGTGGACGAGGTT
CATGAACCTCTACCAGATCGTGATGTCGTGGGCATCCGAGAAGCGCAACT
TCATTGACCAGACCATCGAGCTGCGCACCCTGCCCGAGGCACGCAACAAA
TTGAACGACTATGTGACGTCTGTGAAGAGTATTAAACCGATTGTGAAGCA
TCTGAGCGAAATGGACAAGGAACTGGAGCACATTGGCCAAGTGACGACTG
TGGGCGATCTCAAGGACAAACTGCAGGAGGCCGAGGATGCGAAGATATCC
GTGGAAGCGGTGCTGCTAGAGAGGAACTCCCTGCTGCAAGAGGCCTGCGA
GGAATGGGACCAATGTGAACGCAAGATTAAGGATATACGCTCCTGGCACG
AAAAGACGAAGCAGGGACTGGACTCCTCGCAGCAGCAGAAGAAACCGCTG
CGCGATCAGCTCGGTTTCTGTGAGAAGACCCTGGCCGATATCAATGTGCA
GAAAACGAAACTGAGACTGTCCATCGAAAAACTGGAGGTTCATTTCCGCA
ATGGCATGGGCGGTGATCCGCGCCTGAGCGAGACGTCGATGATTTGGTGC
GCGTGCTCGACGGCCTCGCGATTGGTCAAGGCCAAGTCGCAAAGCCTCGA
GCAGACGCTGGCCAGATCGACGTTTACAACAGCAGATGCAGTCCTGCGCA
GCGTATTCATCATGAAGGACAACAGCTCCGCTGGTGATGGCGCCCAGGTA
CTGCCGACAGATCGCGGAGGCGCATTAGCGAGCAAGCATGCGGGACGGTC
TAAATTGCATCGAAATACTTGCCGTTTGACGACACAGTGTTATAACTCGG
GAGCGGATGTCAGCTAGGATGTGCAGACTTCTATACACTCTCGTTGGCTC
CGCGCGCGCCGATAAAT
FMO05165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msp300-RI | 36339 | CG42768-RI | 23145..24255 | 35..1135 | 5080 | 98 | Plus |
| Msp300-RH | 37913 | CG42768-RH | 23145..24255 | 35..1135 | 5080 | 98 | Plus |
| Msp300-RG | 43121 | CG42768-RG | 843..1953 | 35..1135 | 5080 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5154578..5155217 | 35..674 | 3200 | 100 | Plus |
| 2L | 23513712 | 2L | 5155321..5155536 | 674..889 | 1080 | 100 | Plus |
| 2L | 23513712 | 2L | 5155587..5155811 | 886..1102 | 565 | 90.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:53:48 has no hits.
FMO05165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:20 Download gff for
FMO05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msp-300-RG | 837..1935 | 29..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:17 Download gff for
FMO05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msp-300-RD | 23919..25017 | 29..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:33 Download gff for
FMO05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msp300-RG | 837..1935 | 29..1119 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:33 Download gff for
FMO05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5154572..5155217 | 29..674 | 99 | -> | Plus |
| 2L | 5155322..5155534 | 675..887 | 100 | -> | Plus |
| 2L | 5155589..5155805 | 888..1096 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:20 Download gff for
FMO05165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5154572..5155217 | 29..674 | 99 | -> | Plus |
| arm_2L | 5155322..5155534 | 675..887 | 100 | -> | Plus |
| arm_2L | 5155589..5155805 | 888..1096 | 93 | == | Plus |
