FMO05166.5prime Sequence
729 bp (729 high quality bases) assembled on 2008-08-22
> FMO05166.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGCACAATTGCAGCTA
TTTATTTGATCCCCTCTACCTCTTTAGTAATCTGCCCTCGGATATCAAAT
GGAGCATTATCGACAGGTGGGGCACTCATCCACTTCTAATCAAAACGTTT
GCCCAGCGAATTCGCGACGAGCTGGCCAAATTTGTGGAAACGAAACGAAA
TGATGTGGTCATCCTCTTCACTGCCCACTCCCTTCCCCTTAAGGCTGTGA
ACCGGGGTGACGCGTATCCCTCGGAGATTGGTGCTAGCGTACACATGGTG
ATGCAGGAACTTGGTCAGACGAATCCCTACAGCCTGGCATGGCAATCCAA
GGTGGGCCCGCTACCCTGGCTGGCGCCCGCAACTGATGATGCCATTAAGG
GCTATGTTAAGCAAGGCCTGAAGAACTTCATCCTTGTGCCCATTGCCTTC
GTGAACGAGCACATCGAGACGCTGCATGAGCTCGACATCGAGTACTGCGA
CGAACTGGCCAAGGAGGTAGGCGTAGAGGAAATCCGTCGAGCTGCAACCC
CCAACGACCACCCGCTGTTCATCGACGCCCTGACAAACGTTGTGGCAGAC
CACCTGAAGTCCCAGCAGGCAGTCAACCCCAAGTTCCTCATGCGTTGTCC
CATGTGCTCCAATCCAAAGTGCAGGGAGAGCAAAAGCTGGTACCGCCAGC
TCTGCTCGAACGCAAGCTTTCTAGACCAT
FMO05166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FeCH-RB | 1338 | CG2098-RB | 492..1169 | 34..711 | 3390 | 100 | Plus |
| FeCH-RA | 1407 | CG2098-RA | 605..1238 | 78..711 | 3170 | 100 | Plus |
| FeCH-RC | 1466 | CG2098-RC | 605..927 | 78..400 | 1615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31810999..31811365 | 400..34 | 1835 | 100 | Minus |
| 3R | 32079331 | 3R | 31810629..31810942 | 711..398 | 1570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:13 has no hits.
FMO05166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:38 Download gff for
FMO05166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FeCH-RB | 489..1174 | 31..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:19 Download gff for
FMO05166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ferrochelatase-RB | 489..1174 | 31..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:00 Download gff for
FMO05166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FeCH-RB | 489..1174 | 31..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:00 Download gff for
FMO05166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31810624..31810940 | 400..717 | 99 | <- | Minus |
| 3R | 31811000..31811368 | 31..399 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:38 Download gff for
FMO05166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27636346..27636662 | 400..717 | 99 | <- | Minus |
| arm_3R | 27636722..27637090 | 31..399 | 99 | | Minus |
