FMO05167.5prime Sequence
1220 bp (1000 high quality bases) assembled on 2008-08-22
> FMO05167.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACCGAAACGAA
TCCCAGTGAAATATCTCCTCCGAGCGAAGAGCCACCGGCAGAGGACGAAT
CCACTGACCACTCTCCAGCGGAGGCAGTGCTGAGCAATAATTCCTCGAGT
GTCTGCAATGTTGTGGAGCCGGATGATGAGCACGAAGTTAATTCCGTGGA
TCGGGAGGACACCGCCAGTTTGTTCAGCACTACTACGACCACCACCAGAA
GCAAATCGCCAAATACACGAAAATTGAACCGCCTGTGTCGGCGGATCAAG
GCACCCAAAATGGTTCAGCCCTTGTACAAATATAGCTCCCATGTCCGCGA
GGACCACAACCATCAGATCTTCGGAGTGCAGTTCAATCCGTTCCTGGACA
GAGGCCAGCCGCAGGTGTTCGCCACCGTTGGCAAGGATCGGGTTTCCATT
TATGAGTGCGAGAGGAGCACCGGACAGGAGTCCTGCGAAGGCATTCGACT
GCTGCAAGTCTACGCAGACCCAGATACCGATGAAAGTTTCTACACATGCG
CTTGGTCCTACGACTCTGTGACCGGCGATCCTGTGCTTGCCGCGGCTGGT
TACCGCGGCGTCATTCGCATATTCAATCCGGTTAAGCACCAGTGCAGCAA
AAACTACATTGGTCACGGGCACGCCATTAACGAGCTGAAGTTTCATCCGA
CTAGACCGCAGTTACTTCTGTCCGGCAGCAAGGATCACTCCCTGCGCCTT
TGGAACATTCAGTCGGACGTGTGTGTGGCGGTTTTCGGCGGCGTAGAAGG
ACACCGCGACGAAGTGTTGTCTGTGGACTTTGATTTGCGCGGTGATCGCA
TCATGTCCAGTGGAATGAATCACTCACTGAAGCTCTGGCGACTGGATAAG
CCCGATATAAAGAGGCCATCGAGCTGAGCTCTGGTTTAGTCCAACAAGAT
ACGGGTCCGTTTCCCACGATCAAGGACACTTCCGGACTTCTCGACAGGGA
TATAATCGTATATGTGGATTGCGTCATGGTTCGGCGACTTTGTCTTTCGA
ATCATGCCAGAACTCATTGTTGCTGAGCGGCATACTTCCGAATCGTGCAT
GAGTAGCCAAGAATCCGCACAGGGCTGCTTCATGACTCAAAAGTGCAGAT
CTGTCGAACCTGCTAAGCCTGGCAACGTTCTGCCACTTGGAACAACGTGC
CACACATTGTTCTGGGAATG
FMO05167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| escl-RC | 1532 | CG5202-RC | 47..1135 | 37..1103 | 4835 | 97.4 | Plus |
| escl-RA | 1809 | CG5202-RA | 47..1135 | 37..1103 | 4835 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11991575..11992108 | 526..1047 | 2080 | 97 | Plus |
| 2L | 23513712 | 2L | 11990973..11991271 | 37..335 | 1495 | 100 | Plus |
| 2L | 23513712 | 2L | 11991328..11991519 | 334..525 | 960 | 100 | Plus |
| 2L | 23513712 | 2L | 11827992..11828245 | 905..652 | 280 | 74 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:07 has no hits.
FMO05167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:19 Download gff for
FMO05167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| escl-RA | 42..1096 | 29..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:21 Download gff for
FMO05167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| escl-RA | 42..1096 | 29..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:15 Download gff for
FMO05167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| escl-RA | 42..1096 | 29..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:15 Download gff for
FMO05167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11990968..11991271 | 29..335 | 98 | -> | Plus |
| 2L | 11991330..11991519 | 336..525 | 100 | -> | Plus |
| 2L | 11991575..11992132 | 526..1069 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:19 Download gff for
FMO05167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11990968..11991271 | 29..335 | 98 | -> | Plus |
| arm_2L | 11991330..11991519 | 336..525 | 100 | -> | Plus |
| arm_2L | 11991575..11992132 | 526..1069 | 96 | -> | Plus |
