FMO05168.5prime Sequence
1231 bp (844 high quality bases) assembled on 2008-08-22
> FMO05168.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCCACATGATCAGCTTAGCC
CCCCTGATCATCCTAGTCCTCGCTTGCCTGGGAAACACGGCCAGCGAGAA
GTTGCCCAACATTCTGCTGATCCTGTCCGACGATCAGGATGTGGAGCTGC
GCGGTATGTTTCCCATGGAGCATACGATCGAAATGCTGGGTTTCGGTGGC
GCCCTGTTCCACAACGCCTACACGCCCTCGCCCATCTGCTGTCCGGCGAG
GACGAGTCTGCTGACGGGCATGTATGCGCACAATCACGGCACCCGGAACA
ATTCCGTAAGTGGTGGATGCTACGGACCACACTGGCGGCGAGCGCTGGAG
CCCCGGGCCTTGCCATACATCTTGCAGCAGCACGGATACAACACCTTCTT
TGGCGGGAAGTACTTGAATCAGTACTGGGGTGCTGGGGATGTGCCAAAGG
GTTGGAACCACTTCTATGGCCTTCACGGGAACTCTAGATACTATAACTAC
ACACTGCGCGAAAATAGCGGCAACGTGCACTACGAGTCCACCTACCTAAC
CGATCTGCTAAGAGATCGCGCCGCTGACTTTCTAAGAAATGCTACACAAT
CCTCGGAACCGTTCTTCGCGATGGTCGCCCCACCGGCAGCCCATGAACCC
TTCACTCCGGCACCAAGACATGAGGGTGTGTTCTCCCATATCGAAGCCCT
GCGCACACCCAGCTTCAATCAAGTTAAGCAAGATAAGCACTGGTTGGTGC
GAGCAGCACGTCGTCTGCCCAACGAAACCATCAACACCATAGACACGTAT
TTCCAGAAACGCTGGGAAACGCTGCTGGCCGTGGACGAACTGGTCGTCAC
CTTGATGGGAGTGCTAACGATACGCATCGTTGGAGAACCACCTACATTAT
CTACACCTCCGATAACGGCTACCATGTGGGGCAGTTTGCACAGCCCTTCG
ATAAATACAGCACTACGTAACGATATTACGTACGCTGCTATTCTGGGACT
GGAATAGCACCTGAAAGCCTATTGACACTGCCGTCAGCTATGACTTGGCT
ACGACTATATGGACTGGACGACTCGAACACATCTACATGATGGGCAAACT
TTCCGACTTGCTCAACAAGGCAACGGTCCATTTTCAGCGTCCTTGATCGG
TCCTGGCCGGGACCTGACCTGAACTGAAGCCTTGCCAACAGACTATCCAT
GGGGATGTCCCCGCCGGAATTGCCACTGTTC
FMO05168.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18278-RA | 1677 | CG18278-RA | 70..1150 | 35..1097 | 4715 | 97 | Plus |
| CG30059-RA | 1683 | CG30059-RA | 76..1156 | 35..1097 | 4505 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13409063..13409762 | 737..38 | 3470 | 99.7 | Minus |
| 2R | 25286936 | 2R | 13413790..13414489 | 737..38 | 3260 | 97.7 | Minus |
| 2R | 25286936 | 2R | 13408698..13409012 | 1037..731 | 980 | 94 | Minus |
| 2R | 25286936 | 2R | 13413425..13413739 | 1037..731 | 980 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:46 has no hits.
FMO05168.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:09 Download gff for
FMO05168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18278-RA | 62..1106 | 26..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:22 Download gff for
FMO05168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18278-RA | 128..1172 | 26..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:16 Download gff for
FMO05168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18278-RA | 62..1106 | 26..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:16 Download gff for
FMO05168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13408698..13409010 | 733..1037 | 94 | <- | Minus |
| 2R | 13409068..13409768 | 31..732 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:09 Download gff for
FMO05168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9296203..9296515 | 733..1037 | 94 | <- | Minus |
| arm_2R | 9296573..9297273 | 31..732 | 99 | | Minus |
