FMO05169.5prime Sequence
1279 bp (1029 high quality bases) assembled on 2008-08-22
> FMO05169.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGTGCCT
TAACACCCTGAAGCAGGAAATCAAAACGCTAGAGAAGATCTTCCCGAAGA
ACCACGAGCGCTTTCAGATCCTCAATTCCAGCGTCGACGAACTGCTCTGC
CGTTTTATCGATAAGAATGGAAAGCGGTACGATATTCACGCCAACATAAC
GGAAACGTATCCCTCATCGCCGCCAGTTTGGTTCGCCGAAAGCGAGGAGA
CGAGCGTCACAAATGCTGTTCAAATACTTAGCAATACGAATGGACGTGAT
AATCACGTGATCAATCAGGTGGGCATACTGCTGCGTGAGCTGTGCCGCCT
TCACAACGTTCCACTGCCACCCGACATCGATAATTTGGCTCTGCCGCTGC
AAACGCCGCCGCCATCCGCTTCCCCCCTTCGCTGCGAGCAGAGACCAGGT
GGTGGTGGAGCGGGGGGCGGTGGCGGACCCCACGGCAACGAGGAGACCGA
TTCGGATCAGGAGGAGATCGAGGATCCCATCGGCGAGAGCGAACAGGAGA
GCGAGGGCGATGAGGACTTGCCGCTGGAAATGGATGATGTACGCAGTACA
AGCAAGAAGGACGACATGGAAGTGGAACACCTAGCGACTCTAGAAAAACT
GCGTCAAAGTCAGAGACAAGACTATCTAAAAGGTTCCGTTTCGGGTTCCG
TGCAGGCAACCGATCGCTTAATGAAGGAATTACGCGACATTTATCGCTCA
GACGCCTTCAAAAAGAACATGTATTCTATTGAGCTCGTCAATGAGTCGAT
TTACGAATGGAACATTCGCCTCAAGTCTGTCGACCCGGACAGTCCGCTGC
ACAGTGATCTGCAAATGCTCAAAGAGAAGGAGGGCAAGGACAGCATACTG
CTCAACATCCTGTTCAAGGAGACGTATCCCTTCGAGCCGCCATGTGTGCG
CGTTGTCCATCCGATTATCTCAGGCGGCTATGTGCTCATCGGTGGTGCAT
CTGCATGGAAATGCTGACCAAACAGGGCTGGAGCTCGGCATATACGTGGA
AGCGGTTATCATGCAAATGCAGCCACCTTCGTAAGGAAAAGGCCGGCATC
AATTTCGGGGCTACCAAGACCTTGACCCAGGCCAATAAGTTGGCTCAGAC
CAGCGAAGCTTCAATCTCTGGGTGAAATTCAGAATAGAAATGGCAAGGTT
CACCCGCAAGGAAAATGCCAAGCACTGATCAATTGTGGGCCGCGGCCCGC
TTAGGGTCAATATATCTAAATCTAATATC
FMO05169.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2924-RD | 2606 | CG2924-RD | 619..1792 | 40..1205 | 5235 | 97.1 | Plus |
| CG2924-RB | 2717 | CG2924-RB | 730..1903 | 40..1205 | 5235 | 97.1 | Plus |
| CG2924-RE | 2928 | CG2924-RE | 669..1842 | 40..1205 | 5235 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2266820..2267110 | 606..316 | 1455 | 100 | Minus |
| X | 23542271 | X | 2266247..2266539 | 974..682 | 1435 | 99.3 | Minus |
| X | 23542271 | X | 2268937..2269099 | 202..40 | 815 | 100 | Minus |
| X | 23542271 | X | 2267174..2267294 | 321..201 | 605 | 100 | Minus |
| X | 23542271 | X | 2266037..2266186 | 1117..972 | 430 | 92 | Minus |
| X | 23542271 | X | 2266596..2266673 | 682..605 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:34 has no hits.
FMO05169.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:21 Download gff for
FMO05169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RA | 663..1764 | 32..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:24 Download gff for
FMO05169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RC | 608..1709 | 32..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:32 Download gff for
FMO05169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2924-RE | 663..1764 | 32..1131 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:32 Download gff for
FMO05169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2266037..2266184 | 974..1117 | 92 | <- | Minus |
| X | 2266248..2266539 | 682..973 | 99 | <- | Minus |
| X | 2266597..2266671 | 607..681 | 100 | <- | Minus |
| X | 2266820..2267107 | 319..606 | 100 | <- | Minus |
| X | 2267177..2267293 | 202..318 | 100 | <- | Minus |
| X | 2268938..2269105 | 32..201 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:21 Download gff for
FMO05169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2160070..2160217 | 974..1117 | 92 | <- | Minus |
| arm_X | 2160281..2160572 | 682..973 | 99 | <- | Minus |
| arm_X | 2160630..2160704 | 607..681 | 100 | <- | Minus |
| arm_X | 2160853..2161140 | 319..606 | 100 | <- | Minus |
| arm_X | 2161210..2161326 | 202..318 | 100 | <- | Minus |
| arm_X | 2162971..2163138 | 32..201 | 97 | | Minus |
