FMO05170.5prime Sequence
1214 bp (1010 high quality bases) assembled on 2008-08-22
> FMO05170.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCTCATACACA
CAGCAGGCATGGATCATCAGGAGATGATTTATGCAGTACTGATGAAGTGA
AGATTTTTAAAGACGAAGGAGATCGCGAGGATGAAAAAATATCATCTGAG
AACTTATTAGTTGAAGAAAAGTCTAGCTTAATAGATTTAACTGAAAGTGA
GGAAAAGGGTCACAAAATTTCAAGGCCGGACCACAGCCCTGTTTTTAATA
AGCTGGACACCCACGCCCCTAGCTTTAACATGGGTTACTTAGTTTCTCCT
TATTCGTATGCCAATGGTTCTCCAAGTGGCTTACCGGTAACTATGGCCAA
CAAAATTGGACTGCCTCCGTTTTTTTGTCACAATGCTGATCCGTTATCAA
CACCACCACCAGCGCATTGCGGAATTCCTCCATATCAACTGGATCCTAAG
ATGGGCTTAACTCGACCAGCGCTATACCCATTTGCGGGAGGTCAATATCC
TTACCCAATGCTAAGTTCAGATATGTCTCAAGTGGCATCATGGCACACTC
CTTCTGTTTATTCTGCATCTAGTTTTAGAACTCCTTATCCCTCCTCACTA
CCAATAAATACTACACTTGCAAGTGATTTTCCATTCCGTTTTTCACCTAG
CCTTTTACCTTCAGTACATGCCACATCGCACCACGTTATAAATGCTCATT
CTGCTATTGTGGGGGTTAGCTCTAAACAAGAATGCGGTGTTCAGGACCCA
ACAACGAATAATAGATATCCAAGGAACCTGGAAAGCAAAGCACACATCAA
ATGCGCAATCAAATGAATCCAAGGAGACAACAAATGATAAAAAAAAACCC
CATATTAAGAAGCCACTAAATGCGTTCATGCTCTATATGAAGGAAATGCG
TGCTAAGGTTGTTGCTGAATGCACTCTGAAGATCGGCTGCGATTAATCAG
ATTTAGAAGACGTGGCATGCCTTGGGGCGTGAGGAGCAGCGAAGTATTAC
GAGTGCGCGAGGAGCGACACTGCCCATGCAAATGTATCCTGATTGGAGCT
CTCGTACAATGCCTCTCGCGCAAAAACGTAGCGTAGCCAGATCCATTGAC
GAAGCCATATATGAAAATGCCGCCCGTTCGGACTAATCACAGTCAGGTGC
ACGGCAGGTGTTACATTGTCATCTAGTATGCATGAATAGATCGCGGAAGT
CAGCTTCTGAACTG
FMO05170.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pan-RI | 3795 | CG34403-RI | 697..1749 | 36..1076 | 4935 | 98.6 | Plus |
| pan-RH | 4219 | CG34403-RH | 697..1749 | 36..1076 | 4935 | 98.6 | Plus |
| pan-RQ | 4954 | CG34403-RQ | 697..1749 | 36..1076 | 4935 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 72429..72595 | 36..202 | 835 | 100 | Plus |
| 4 | 1348131 | 4 | 94421..94604 | 772..954 | 810 | 98.4 | Plus |
| 4 | 1348131 | 4 | 87015..87167 | 622..774 | 765 | 100 | Plus |
| 4 | 1348131 | 4 | 82637..82747 | 345..455 | 555 | 100 | Plus |
| 4 | 1348131 | 4 | 75068..75166 | 248..346 | 495 | 100 | Plus |
| 4 | 1348131 | 4 | 85711..85800 | 454..543 | 450 | 100 | Plus |
| 4 | 1348131 | 4 | 85852..85933 | 542..623 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 97821..97936 | 962..1070 | 285 | 93.1 | Plus |
| 4 | 1348131 | 4 | 72815..72867 | 200..252 | 250 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:43:42 has no hits.
FMO05170.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:11 Download gff for
FMO05170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RQ | 697..1730 | 36..1059 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:58 Download gff for
FMO05170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RI | 420..1481 | 36..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:59 Download gff for
FMO05170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RQ | 697..1730 | 36..1059 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:59 Download gff for
FMO05170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 87017..87166 | 624..773 | 100 | -> | Plus |
| 4 | 94423..94615 | 774..962 | 96 | -> | Plus |
| 4 | 72429..72594 | 36..201 | 100 | -> | Plus |
| 4 | 72817..72862 | 202..247 | 100 | -> | Plus |
| 4 | 75068..75165 | 248..345 | 100 | -> | Plus |
| 4 | 82638..82746 | 346..454 | 100 | -> | Plus |
| 4 | 85712..85799 | 455..542 | 100 | -> | Plus |
| 4 | 85853..85933 | 543..623 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:11 Download gff for
FMO05170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 107643..107792 | 624..773 | 100 | -> | Plus |
| arm_4 | 93055..93220 | 36..201 | 100 | -> | Plus |
| arm_4 | 93443..93488 | 202..247 | 100 | -> | Plus |
| arm_4 | 95694..95791 | 248..345 | 100 | -> | Plus |
| arm_4 | 103264..103372 | 346..454 | 100 | -> | Plus |
| arm_4 | 106338..106425 | 455..542 | 100 | -> | Plus |
| arm_4 | 106479..106559 | 543..623 | 100 | -> | Plus |
| arm_4 | 115049..115241 | 774..962 | 96 | -> | Plus |
