FMO05171.5prime Sequence
1262 bp (1028 high quality bases) assembled on 2008-08-22
> FMO05171.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCAGCC
ACGAGGAGGATGACCATGAGCACGAGAACGAGCACGGCGAAGAGGTGGAG
GAACAGGAGATCCACGTGGATGTGGACTCGGACTCGCGGATGTCATGTGG
CAGCGGATCCGATGTGGATATGGACGGCGGCAGCTGCTACGACGAGTCCG
AAACGCCATTGAGCGAGTCCCTGCAGTCGGAGCAGACGCGCTCCTCGTCC
AGTGAGAATCTGCCCTTCAGCATATCACGCCTGCTATCCAAGCCCTTCGA
GACGAGTCACCACCACCACAACAACAACAACCACCTGCTCAGCAGCAGTC
CGGGCTCCAGCAGCAACAACAACAACAGCGGCGAAAAGGGCGAGGAGAAG
GAGCTACTGCAGCAGGAGGACCACGACCTGGCCTATAAGCTGGCCACCAG
CATCGCCAACTCGACATACGGAAGCGCCGCAGCACTATACTCGTATCCGC
ATCTCTATCCCTCAGCGGCCGGCGGTCATGTGCTACGTGTACCGCCCCAG
AGAACGCCGCTCACCTGGGCACTACCGCCACTGCATCACGCGGCGCTGGC
ACATCAGGCGGTCAAGGATCGGTTGGCAGCTGCCTTTCCGATCGCCCGAC
GGATCGGACATCCCTACCAGAATCGCACGCCGCCGAAGAGGAAAAAGCCA
CGCACATCCTTCACGCGCATCCAGGTGGCCGAGTTGGAGAAGCGCTTCCA
CAAGCAAAAGTATCTGGCATCCGCGGAGCGAGCGGCACTGGCCCGCGGAC
TGAAGATGACCGATGCCCAGGTGAAGACGTGGTTCAGAACCGACGCACCA
AGTGGATACGACAGACGGGCCGAGGAGCGCGAGGCGGAGCGGCGAGCGGC
GAACAGACTGATGCTGTCCCTCCAGGCGGAGGCCATCAGCAAGGGATTCG
CGCCTCCTTCGGCACCCCTGGGTTCCCAGGGGGGGCGTGAACGGGGCACC
GCTGGCTGCGGTTGCAACGACTACAGCCGTGGGCAGAGGCGTCGCATTCG
GCGGCCTGCCGCAGGCTTTCTAGACATTCGGTTGGCGCGTCGGGCCCAGG
TAAGGTGGTCATTATCTAATCATAATGCCAGATCAATCAACACTAGCTTA
AGAGAGATCTGGCATGGACTAGGGCTTGGATCTCCCACAATAAAACGCCT
GGGGCAACTGGAGGTTCTGAAAAATCGAGTGGAAGTTGGAGGACCCTATC
CGGAATCTTATT
FMO05171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| C15-RA | 1856 | CG7937-RA | 273..1289 | 41..1059 | 4895 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21502252..21502669 | 212..629 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 21507128..21507358 | 627..856 | 1105 | 99.6 | Plus |
| 3R | 32079331 | 3R | 21500258..21500430 | 41..213 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 21512058..21512247 | 868..1059 | 770 | 95.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:54 has no hits.
FMO05171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:32 Download gff for
FMO05171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 273..1289 | 41..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:57 Download gff for
FMO05171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 2..1020 | 39..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:51 Download gff for
FMO05171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 273..1289 | 41..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:51 Download gff for
FMO05171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21500258..21500430 | 41..213 | 100 | -> | Plus |
| 3R | 21502254..21502669 | 214..629 | 100 | -> | Plus |
| 3R | 21507131..21507359 | 630..857 | 99 | -> | Plus |
| 3R | 21512049..21512255 | 858..1066 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:32 Download gff for
FMO05171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17325980..17326152 | 41..213 | 100 | -> | Plus |
| arm_3R | 17327976..17328391 | 214..629 | 100 | -> | Plus |
| arm_3R | 17332853..17333081 | 630..857 | 99 | -> | Plus |
| arm_3R | 17337771..17337977 | 858..1066 | 92 | -> | Plus |
