FMO05174.5prime Sequence
435 bp (350 high quality bases) assembled on 2008-08-22
> FMO05174.5prime
GAGCAGGCCAATAATGAGTTTATGCTGTGCCGGCAGGAGCTGGATGACCC
GCGAGCCTGTTTGGCGGAGGGCAAAACCGTGACCAGCTGCGCCCTGGACT
TCTTCCGCAAGGTGAAGAAGACCTGCCATGAGGAGTTCACGCACTACGCC
ACCTGCCTGGATAAGAGCAGCGGTACTATGGCTTTTTCACATTGCCGCAA
GACCCAGGGAGTGTTCGACAAGTGTATCAAAGATAACTTCGACTGGGATC
GTCCCTCCTATGGATACTTCTCGAGGGCCATGGTCATCCAATCAGCTCGG
GAAGCACCCAAGAAGGAGGAGAAGGTCTCCTATCCCGATGCCACCCCCGG
TTTGCACGAGGATTACCCCAAGCCGCCAGCAAAGTACGGTTCCCCGCTTC
CACTGGCTGGAGGCAAGCTTTTCTAGACTATTCGT
FMO05174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NDUFA8-RD | 666 | CG3683-RD | 182..592 | 1..412 | 1975 | 98.8 | Plus |
| NDUFA8-RC | 683 | CG3683-RC | 199..609 | 1..412 | 1975 | 98.8 | Plus |
| NDUFA8-RB | 668 | CG3683-RB | 184..594 | 1..412 | 1975 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24664854..24665029 | 16..191 | 850 | 98.9 | Plus |
| 2R | 25286936 | 2R | 24665236..24665365 | 282..412 | 590 | 98.5 | Plus |
| 2R | 25286936 | 2R | 24665093..24665185 | 192..284 | 450 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:41 has no hits.
FMO05174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:23 Download gff for
FMO05174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NDUFA8-RB | 184..594 | 1..412 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:31 Download gff for
FMO05174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3683-RA | 190..600 | 1..412 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:44 Download gff for
FMO05174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NDUFA8-RB | 184..594 | 1..412 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:44 Download gff for
FMO05174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24664854..24665029 | 16..191 | 98 | -> | Plus |
| 2R | 24665093..24665183 | 192..282 | 98 | -> | Plus |
| 2R | 24665237..24665365 | 283..412 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:23 Download gff for
FMO05174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20552377..20552552 | 16..191 | 98 | -> | Plus |
| arm_2R | 20552616..20552706 | 192..282 | 98 | -> | Plus |
| arm_2R | 20552760..20552888 | 283..412 | 98 | | Plus |
