FMO05175.5prime Sequence
730 bp (730 high quality bases) assembled on 2008-08-22
> FMO05175.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGAAGGATAAGATGA
GCCTGAACCGGAGCCGGGACAGAGACATCACCGCACACCAGCCGCTGCTC
GACAACGATCGCCACAGCCCCAATCACAATCATTCCATTGCCATACCCAA
TTCGAATTCCAACTCCAACGAGTACCATCAGCATCCACACAACGATCGCA
CGTACCTCGTGGAGTGTCCCAACGGCAACTCGCTGATCAATAGCGGCAGT
CAGGTGGCCAATACCATAGCTGGGACCATGTCGGCGGCAGCGGCAGCAGC
ATCCCGCCACAGCGGCACCAAGTACTCCAAGCTGGAGAACGCCCTGGACA
GTCCCAGTCACTATGGGCAGACGCATCACGGCGGCATGGACAGTCCGAGT
CATAGGTACGTGGGCGAAACAGTGTCCATACAGCAGCGTATGATCCAGGG
ACAGGATGAGCAGCTAGACATGATCAGCGATTCGATTGGTACCCTCAAGA
CGGTCTCGCGGCAAATTGGCGTTGAGCTCGATGAGCAGGCCGTCATGCTA
GACGACTTTGGGAACGAGTTCGATACCACGGAGTCCAAGTTGGATACGAC
CATGAAGAAAGTTGCCAAAGTCTTGCACATGAATAATGATAAACGACAGT
GGGCCGCCATTCTCATCCTATCCGGACTGTTATTGTTTGTGATATTTTTG
TTTATTATTTTGGCAAGCTTTCTAGACCAT
FMO05175.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx6-RD | 1982 | CG7736-RD | 682..1359 | 35..712 | 3375 | 99.9 | Plus |
| Syx6-RB | 1361 | CG7736-RB | 431..1108 | 35..712 | 3375 | 99.9 | Plus |
| Syx6-RE | 1945 | CG7736-RE | 787..1464 | 35..712 | 3375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11221026..11221629 | 35..638 | 3020 | 100 | Plus |
| 2R | 25286936 | 2R | 11221783..11221857 | 638..712 | 360 | 98.7 | Plus |
Blast to na_te.dros performed 2014-11-28 22:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1645..1681 | 712..675 | 115 | 81.6 | Minus |
FMO05175.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:47 Download gff for
FMO05175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RE | 782..1475 | 28..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:33 Download gff for
FMO05175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RD | 675..1368 | 28..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:06 Download gff for
FMO05175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx6-RE | 782..1475 | 28..722 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:06 Download gff for
FMO05175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11221021..11221629 | 28..638 | 99 | -> | Plus |
| 2R | 11221784..11221868 | 639..722 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:47 Download gff for
FMO05175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7108526..7109134 | 28..638 | 99 | -> | Plus |
| arm_2R | 7109289..7109373 | 639..722 | 94 | | Plus |
