FMO05179.5prime Sequence
367 bp (367 high quality bases) assembled on 2008-08-22
> FMO05179.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAATTCCTCA
TCGTCTTCGTCGCCCTCTTCGCCATGGCAGTGGCCCGCCCCAACCTTGCC
GAGATCGTGAGGCAGGTCTCCGATGTTGAGCCCGAGAAGTGGAGCTCCGA
CGTGGAGACCAGCGATGGCACCAGCATCAAACAGGAGGGTGTCCTCAAGA
ACGCTGGCACTGACAACGAGGCCGCTGTCGTCCACGGATCCTTCACCTGG
GTGGATGAGAAGACCGGCGAGAAGTTCACCATCACATACGTGGCTGATGA
GAACGGATACCAGCCCCAGGGCGCCCATCTGCCCGTGGCACCAGTTGCTG
CAAGCTTTCTAGACCAT
FMO05179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp65Ab1-RA | 413 | CG32400-RA | 44..357 | 36..349 | 1570 | 100 | Plus |
| Lcp65Ab2-RA | 416 | CG18773-RA | 47..360 | 36..349 | 1570 | 100 | Plus |
| Cpr65Ax1-RA | 389 | CG34270-RA | 282..353 | 277..348 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6146720..6147033 | 36..349 | 1570 | 100 | Plus |
| 3L | 28110227 | 3L | 6149591..6149904 | 36..349 | 1570 | 100 | Plus |
| 3L | 28110227 | 3L | 6147567..6147638 | 348..277 | 225 | 87.5 | Minus |
| 3L | 28110227 | 3L | 6150438..6150509 | 348..277 | 225 | 87.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:13 has no hits.
FMO05179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:01 Download gff for
FMO05179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab1-RA | 36..361 | 30..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:36 Download gff for
FMO05179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab2-RA | 42..367 | 30..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:26 Download gff for
FMO05179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp65Ab2-RA | 39..364 | 30..354 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:26 Download gff for
FMO05179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6146712..6147037 | 30..354 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:01 Download gff for
FMO05179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6139812..6140137 | 30..354 | 98 | | Plus |
