FMO05180.5prime Sequence
370 bp (370 high quality bases) assembled on 2008-08-22
> FMO05180.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGCTTTCTAC
TAGCTCTCTCCCTGGCCGTCCTGGTCGTTCTGATCCTCCACAGCAGCCAG
GTGTCCTCCACATCAACCACCACCTCCACAAGTGCTTCGGCCACAACCAC
CACGGCTGCTACGACAACAACTGATTCGTCCACCACCACCACCACCGAAT
CCTCCACGACCACCACTGCCTCCACAAAGAAGAAGCACCGACGCCGCCGT
GTCATCATCAGGCGCGTGATCATCCGCCGTGGCAGGGAAGGACGAAGTGA
GAGCGGAGACAATCGCCGACGGGTCGTCGTACGCGTTCGCAGGACGGCCA
ACGCAAGCTTTCTAGACCAT
FMO05180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32189-RA | 430 | CG32189-RA | 29..348 | 33..352 | 1585 | 99.7 | Plus |
| CG32188-RA | 349 | CG32188-RA | 27..346 | 33..352 | 1525 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17834827..17835146 | 352..33 | 1585 | 99.7 | Minus |
| 3L | 28110227 | 3L | 17833280..17833599 | 352..33 | 1525 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:30 has no hits.
FMO05180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:23 Download gff for
FMO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32189-RA | 29..352 | 33..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:37 Download gff for
FMO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32189-RA | 29..352 | 33..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:22 Download gff for
FMO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32189-RA | 29..352 | 33..356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:22 Download gff for
FMO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17834822..17835146 | 33..356 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:23 Download gff for
FMO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17827922..17828246 | 33..356 | 99 | | Minus |
