FMO05181.5prime Sequence
1260 bp (930 high quality bases) assembled on 2008-08-22
> FMO05181.5prime
TTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAGCGAACCGC
TAGCATTGGCGAGCGGCGGCGTGGTGGATCCAACGGCCGCATCCACCAGC
GTCACTATTTCGAACCTGCCACAGCCAACAGTTGCGCTGGGATCGGAATC
TAAATCGTCCATGGACCTAGAGGATCCCCGGAACAATAGATTCTTTCTCT
GGAAATGGTTGTGTAACTGGACATCCAGCTCACCAACTATGCTGCGTGCC
GTGGAGAAGAAGATACTGTCGTACGTGAAGCTGCCCTACCGCGGCTTCTT
CGTGGATATCGGGCCGGCGGTGGGCGAAGCGGATAAGATCTGGACCATCA
GCATGAATACCGAGTCCAAGGAGGTGCCGCTGGTGCTCCTGCATGGCCTG
GGCGCAGGCATTGCCCTGTGGGTGATGAACCTCGATGCCTTTGCCAAGGG
CCGACCAGTATACGCCATGGACATCCTCGGATTCGGTCGCAGCTCTCGGC
CGCTGTTCGCCAAGGATGCGCTGGTGTGCGAGAAGCAATTTGTGAAATCG
GTGGAGGAGTGGCGGCGCGAGATGAACATCAACGACATGATTCTGTTGGG
CCACTCGATGGGCGGCTTCATTGCCTCCAGCTACGCCCTCTCACATCCGG
AGCGTGTGAAACACCTCATACTAGCCGATCCCTGGGGCTTCCCCGAGAAG
CCCTCGGATTCGACCAACGGCAAAACAATACCGCTCTGGGTGCGGGCCAT
AGCTAGAGTACTGACCCCGCTAAATCCGTTGTGGGCTCTCCGCGCCGCCG
GACCCTTTGGCCAGTGGGTGATGCAAAAGACGCGGCCAGACATTATGCTA
AAGTTCCAGAGCATCATCGAGGAGGATATCAACTTGCTGCCGCAGTACAT
ACACCAGTGCAATGCGCAGAATCTCAGCGGTGGCGTCCGCCTTCCACACA
TGATGCAATCCTTTGGATGGCCAAGCACCTCATGATTCACGCATCAAGAC
GTGCGCAGCGAATACCATTCACGTTTCATCTCGCTCCGTCCGTGATCGAC
TCGTTCTCGGGAAAAGATCAGTCCAGCCGACAGCAATATGAGAAATCAGA
ACGTGACGGCTCTGTACTCGCTAATGGCCGACACCCGGACGTGTTCCACG
CCTCATGGACCGAAACTTGTAATGTACACGGTCCAGTACGTTAAGCCTTG
ACCATTCCGCTAATCCCTGTCGTCAGAGAGGCAATCTCCACCCGGTACAC
AACCTAAACC
FMO05181.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1882-RG | 2695 | CG1882-RG | 351..1419 | 34..1090 | 4770 | 97.3 | Plus |
| CG1882-RF | 1756 | CG1882-RF | 153..1221 | 34..1090 | 4770 | 97.3 | Plus |
| CG1882-RA | 1954 | CG1882-RA | 351..1419 | 34..1090 | 4770 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7813279..7814137 | 171..1025 | 3895 | 98.5 | Plus |
| 2R | 25286936 | 2R | 7812854..7812993 | 34..173 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:58 has no hits.
FMO05181.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:51 Download gff for
FMO05181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RA | 349..1385 | 31..1061 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:39 Download gff for
FMO05181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RA | 347..1383 | 31..1061 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:26 Download gff for
FMO05181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1882-RA | 349..1385 | 31..1061 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:26 Download gff for
FMO05181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7812852..7812992 | 31..172 | 98 | -> | Plus |
| 2R | 7813281..7814176 | 173..1061 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:51 Download gff for
FMO05181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3700357..3700497 | 31..172 | 98 | -> | Plus |
| arm_2R | 3700786..3701681 | 173..1061 | 97 | == | Plus |
