Clone FMO05186 Report

Search the DGRC for FMO05186

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:51
Well:86
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05186.5prime Sequence

639 bp (639 high quality bases) assembled on 2008-08-22

> FMO05186.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGTTACTGCC
TTCGGGGCGTTCGAATAGTGATGTCTATCCGCTACAAAATGCCGCAAACA
CAACAGCAACATCGACCGGAGGAGCAACATCAGCTGGTGGCGCGGGTGGA
GCAGGCGGAGTGGGAGGCGTCTGTGGTGGCGTAGGAGCAACATCCAACCC
CAAGCCCTTGCTACTGACACGAACATCATCGCCTCAATTGACAACATTGC
CGACAACAAATGGCTCTGTTGTCCATGCCACGCCCACCCGCTCCAACGGA
TGTCCGTTGACCCAATCCTCCGGAATCCCAGTGACAATGGCAACAACAGC
CACAGCAATGGCTACAGCAACACCAGACCCATCTGGATGTACGGAAGTGG
AGGGTACAGCATCGACGGAGCTGAGCACTGGGTTAGCAAATGAAACTAAC
TGCGGCACCGGGATCTATGGGCCACTTTTGGGTCAAAGTCATGGGGGCGT
CATCGCTGGCATGACCGAAAATTGGCCAGAAATTGATGGACACTTGGAGG
CCATACAGGAAAAGCTCAAGCCCGGCTGGAGTGTTCATGTGGGCAAGGAG
GGGAGGCTCTACTATTGCAAGGCAAGCTTTCTAGACCAT

FMO05186.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG42788-RB 6686 CG42788-RB 333..916 37..620 2920 100 Plus
CG42788-RC 6683 CG42788-RC 333..916 37..620 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15111592..15112176 621..37 2925 100 Minus
Blast to na_te.dros performed 2014-11-28 20:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6858 329..427 130 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6825 329..375 127 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6784 329..376 123 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2607..2661 329..383 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 329..387 117 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2430 77..134 116 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6839 340..459 114 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2489 101..259 109 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2356..2414 77..136 108 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2396..2438 334..376 107 72.1 Plus

FMO05186.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:01 Download gff for FMO05186.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 328..917 32..624 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:44 Download gff for FMO05186.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6934-RA 327..917 32..624 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:39 Download gff for FMO05186.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42788-RC 330..919 32..624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:39 Download gff for FMO05186.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15111586..15112179 32..629 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:01 Download gff for FMO05186.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10937308..10937901 32..629 98   Minus