FMO05186.5prime Sequence
639 bp (639 high quality bases) assembled on 2008-08-22
> FMO05186.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGTTACTGCC
TTCGGGGCGTTCGAATAGTGATGTCTATCCGCTACAAAATGCCGCAAACA
CAACAGCAACATCGACCGGAGGAGCAACATCAGCTGGTGGCGCGGGTGGA
GCAGGCGGAGTGGGAGGCGTCTGTGGTGGCGTAGGAGCAACATCCAACCC
CAAGCCCTTGCTACTGACACGAACATCATCGCCTCAATTGACAACATTGC
CGACAACAAATGGCTCTGTTGTCCATGCCACGCCCACCCGCTCCAACGGA
TGTCCGTTGACCCAATCCTCCGGAATCCCAGTGACAATGGCAACAACAGC
CACAGCAATGGCTACAGCAACACCAGACCCATCTGGATGTACGGAAGTGG
AGGGTACAGCATCGACGGAGCTGAGCACTGGGTTAGCAAATGAAACTAAC
TGCGGCACCGGGATCTATGGGCCACTTTTGGGTCAAAGTCATGGGGGCGT
CATCGCTGGCATGACCGAAAATTGGCCAGAAATTGATGGACACTTGGAGG
CCATACAGGAAAAGCTCAAGCCCGGCTGGAGTGTTCATGTGGGCAAGGAG
GGGAGGCTCTACTATTGCAAGGCAAGCTTTCTAGACCAT
FMO05186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42788-RB | 6686 | CG42788-RB | 333..916 | 37..620 | 2920 | 100 | Plus |
CG42788-RC | 6683 | CG42788-RC | 333..916 | 37..620 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15111592..15112176 | 621..37 | 2925 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6858 | 329..427 | 130 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6825 | 329..375 | 127 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6784 | 329..376 | 123 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2661 | 329..383 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6876 | 329..387 | 117 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2430 | 77..134 | 116 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6839 | 340..459 | 114 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2489 | 101..259 | 109 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2414 | 77..136 | 108 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2396..2438 | 334..376 | 107 | 72.1 | Plus |
FMO05186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:01 Download gff for
FMO05186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 328..917 | 32..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:44 Download gff for
FMO05186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6934-RA | 327..917 | 32..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:39 Download gff for
FMO05186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42788-RC | 330..919 | 32..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:39 Download gff for
FMO05186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15111586..15112179 | 32..629 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:01 Download gff for
FMO05186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10937308..10937901 | 32..629 | 98 | | Minus |