FMO05187.5prime Sequence
491 bp (460 high quality bases) assembled on 2008-08-22
> FMO05187.5prime
ATAGCATACCTTATACGAAGTTATCAATCCACATGTTGCGCATACGCCGT
GTGAGCCACGTGCAGCTGCTCGTTCTAATGGCAATCGTTGTGGTGGTGAC
GGCAAAACAGGAAAGTTCAACGCGTCAATTCGGCGGTGGCCAGAACTTCG
GCAACGGCCTGGGCCCCTCCTTTGGTGGCGTGGGCGCTGGTGGTCTAGGG
CCTGGGGCCGGGTTTGGACCCGGTTCCGCAGCCGGATATCCGGGACAAGG
CGGCTACAGACCAACGCAGCAGCCGGGCTGCCCGCTGTGCGATTCGACGG
TTTACTCGTACTGCTCGCACAAGATGGTACACGATGCCTGTTGCTGCTAT
TTTCCAGGCGGTGCCCCGCACTTGAGACCGCCCCAGTGTTTGTACTACGA
CTGCTCGCTGCTTTATGCCAAATCCTGTTACGAGCACGCCCTCATCAAGA
ACTGCTGCTGCAATAATCCCTACGCAAGCTTTCTAGACCAT
FMO05187.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12540-RA | 772 | CG12540-RA | 108..553 | 28..473 | 2140 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14496539..14496781 | 116..358 | 1140 | 97.9 | Plus |
| X | 23542271 | X | 14496903..14497021 | 355..473 | 580 | 99.2 | Plus |
| X | 23542271 | X | 14496242..14496334 | 28..120 | 450 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:17 has no hits.
FMO05187.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:59 Download gff for
FMO05187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 102..557 | 25..479 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:46 Download gff for
FMO05187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 102..557 | 25..479 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:37 Download gff for
FMO05187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12540-RA | 104..559 | 25..479 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:37 Download gff for
FMO05187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14496238..14496334 | 25..120 | 97 | -> | Plus |
| X | 14496544..14496780 | 121..357 | 98 | -> | Plus |
| X | 14496906..14497027 | 358..479 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:59 Download gff for
FMO05187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14390271..14390367 | 25..120 | 97 | -> | Plus |
| arm_X | 14390577..14390813 | 121..357 | 98 | -> | Plus |
| arm_X | 14390939..14391060 | 358..479 | 96 | | Plus |
