FMO05188.5prime Sequence
1087 bp (928 high quality bases) assembled on 2008-08-22
> FMO05188.5prime
TATAGCATACCTTATACGAAGTTATCAGTCGACATGGCGGCAGGTCCAAT
TGCTGAACGCAACCAAGATGCCACCATCTATGCCGGCGGTCTTGACGACA
AGGTGTCGGAAACGCTGCTTTGGGAGCTGTTTGTCCAGGCAGGACCAGTG
GTGAACGTACACATGCCCAAGGATCGTGTCACCCAAATGCACCAGGGCTA
TGGATTCGTCGAGTTCCTCAGCGAGGAAGACGCCGACTATGGAATAAAGA
TCATGAACATGATCAAGCTTTACGGCAAGCCCATTCGCGTGAACAAGGCG
TCGGCGCATCAGAAGAACCTGGACGTCGGCGCCAACATCTTCATTGGCAA
CCTAGACGTGGAAGTGGACGAGAAGCTGCTGTACGATACGTTCTCCGCCT
TCGGCGTTATACTGCAGACGCCGAAGATCATGCGAGACCCAGAGACGGGC
AAGTCTAAGAGCTTTGCGTTCATCAACTTTGCCAGCTTCGAGGCCAGCGA
TGCGGCCATGGACGCCATGAACGGCCAGTACCTGTGCAACCGTCCCATTT
CCGTGTCCTATGCCTTCAAGAAGGATCACAAGGGCGAGCGTCACGGTTCG
GCTGCGGAGCGCCTGTTGGCCGCCCAGAATCCATCGACCCATGCAGACCG
GCCGCATCAATTGTTCGCCGATGCACCGGTGCAAACCATGATGCCCCAGA
TGCCGGGCCAGATCCCGGCCCAGATGCCGGGCCAGATGATGCCGCCACCC
ATGATGGCGCCGCCGCCGCCGGTGGTGCCCGTTTTCAAATAACATATGGG
CATGCTAGCACCGCCGCCGCCCGTTCCCAGCCTGCACCGTTCCCAGCTAC
GATACCGCCGCCTCCGTTGCCACCGATGACCGGCGACAGCCGCCGCCTGC
CGCCAGCATTGAGCATTCCGCCTGCCGCCTCGCATTGATGCAACAAAATG
CATGGGCACCGCCCTGCATGTCCTGCTCCTCGGCCCAGAACACCGCCCAC
CAACTGGCGTCCGCGCCGTTGCCTTCCAACCAGGCCGTACGCACGTCCTA
TCAACCGAACGCTACAGTAAGCAAGCTTTCTAAACAT
FMO05188.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spx-RA | 1643 | CG3780-RA | 86..1114 | 30..1056 | 4660 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6256160..6257021 | 151..1014 | 3850 | 97.9 | Plus |
| X | 23542271 | X | 6256017..6256102 | 66..151 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:41 has no hits.
FMO05188.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:02 Download gff for
FMO05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spx-RA | 79..1087 | 24..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:48 Download gff for
FMO05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spx-RA | 68..1076 | 24..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:27 Download gff for
FMO05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spx-RA | 79..1087 | 24..1031 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:27 Download gff for
FMO05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6255900..6255944 | 24..67 | 91 | -> | Plus |
| X | 6256019..6256102 | 68..151 | 100 | -> | Plus |
| X | 6256161..6257040 | 152..1031 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:02 Download gff for
FMO05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6149933..6149977 | 24..67 | 91 | -> | Plus |
| arm_X | 6150052..6150135 | 68..151 | 100 | -> | Plus |
| arm_X | 6150194..6151073 | 152..1031 | 97 | | Plus |
