FMO05189.5prime Sequence
663 bp (663 high quality bases) assembled on 2008-08-22
> FMO05189.5prime
AGCATACCTTATACGAAGTTATCAGTCGACATGAAGCTGTTCTTATCCGT
TTTCGTGGTAGCCCTGGTGGCCGGCGTCGTTGTTGCCGACGATAGCAAGG
GTCCCAAAGTGACCGAGAAGGTTTTCTTTGACATCACCATTGGCGGCGAG
CCCGCTGGTCGCATCGAGATCGGTCTGTTCGGCAAGACGGTGCCCAAGAC
GGTGGAGAACTTCAAGGAGCTGGCGCTGAAGCCGCAGGGCGAGGGCTACA
AGGGCAGCAAGTTCCACCGCATCATCAAGGACTTCATGATCCAGGGCGGT
GACTTCACCAAGGGCGACGGCACCGGCGGTCGCTCCATCTACGGCGAGCG
CTTCGAGGATGAGAACTTCAAGCTGAAGCACTATGGCGCCGGCTGGCTGA
GCATGGCCAACGCTGGCAAGGACACCAACGGATCGCAGTTCTTCATCACC
ACCAAGCAGACCAGCTGGCTGGATGGACGCCACGTCGTCTTCGGCAAGAT
CCTGTCGGGCATGAATGTGGTGCGCCAGATCGAGAACTCGGCCACTGATG
CCCGCGACCGTCCCGTCAAGGATGTGGTCATCGCCAACAGCGGCACCCTG
CCCGTTTCGGAGGCCTTCTCCGTGGCCAAGGCCGATGCCACCGACGCAAG
CTTTCTATACCAT
FMO05189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2852-RD | 1177 | CG2852-RD | 74..688 | 31..645 | 3075 | 100 | Plus |
| CG2852-RA | 882 | CG2852-RA | 74..688 | 31..645 | 3075 | 100 | Plus |
| Cyp1-RA | 1227 | CG9916-RA | 365..561 | 247..443 | 280 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22645135..22645535 | 645..245 | 2005 | 100 | Minus |
| 2R | 25286936 | 2R | 22645921..22646047 | 245..119 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 22646180..22646271 | 122..31 | 460 | 100 | Minus |
| X | 23542271 | X | 16318339..16318535 | 443..247 | 280 | 76.1 | Minus |
| 2R | 25286936 | 2R | 6675226..6675432 | 450..244 | 225 | 73.9 | Minus |
| 3R | 32079331 | 3R | 28340642..28340743 | 262..363 | 180 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:06 has no hits.
FMO05189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:16 Download gff for
FMO05189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 74..693 | 31..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:13:49 Download gff for
FMO05189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 76..695 | 31..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:25 Download gff for
FMO05189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2852-RA | 74..693 | 31..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:25 Download gff for
FMO05189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22645130..22645534 | 246..650 | 99 | <- | Minus |
| 2R | 22645921..22646045 | 121..245 | 100 | <- | Minus |
| 2R | 22646182..22646271 | 31..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:16 Download gff for
FMO05189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18533426..18533550 | 121..245 | 100 | <- | Minus |
| arm_2R | 18533687..18533776 | 31..120 | 100 | | Minus |
| arm_2R | 18532635..18533039 | 246..650 | 99 | <- | Minus |
