FMO05201.5prime Sequence
774 bp (774 high quality bases) assembled on 2008-08-22
> FMO05201.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCAGCGA
CAATCATTTTCAGTACGATGCGGAAGCGGACAAGAGCTTCGCCTTCGATG
ACCAGAGCATCCGGAAGGGATTTATTCGAAAGGTCTACTTGATATTGATG
TGCCAATTGCTGATCACTTTCGGTTTTGTTAGCGTATTTACGTTCTCGAA
AGCTTCGCAGGAATGGGTGCAAAAAAATCCGGCACTGTTTTGGATAGCCT
TGGCCGTTCTTATCGTGACCATGATCTGTATGGCCTGCTGCGAAAGTGTA
CGCCGTAAGACGCCTCTTAACTTCATCTTTCTTTTCCTGTTCACCGTGGC
GGAGTCGTTCCTTCTGGGTATGGTCGCCGGACAGTTTGAGGCTGATGAGG
TCCTGATGGCAGTGGGAATTACGGCCGCGGTGGCCCTGGGACTCACCCTG
TTTGCCCTGCAGACCAAATACGATTTTACGATGTGCGGAGGAGTGTTGGT
GGCCTGTCTGGTGGTCTTCATCATTTTTGGTATAATCGCTATCTTCATAC
CGGGCAAGGTGATCGGACTGGTCTATGCCTCCTTGGGAGCATTGCTCTTC
TCCGTTTACTTGGTGTACGATACCCAGTTGATGCTGGGTGGTAATCATAA
GTACTCCATCAGTCCTGAGGAATACATCTTCGCCGCTCTAAACCTCTACC
TGGACATTATTAACATCTTCATGTACATACTGACCATTATCGGATTGTCT
CGCAATGCAAGCTTTCTAGACCAT
FMO05201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3814-RD | 933 | CG3814-RD | 104..821 | 39..756 | 3590 | 100 | Plus |
| CG3814-RA | 1073 | CG3814-RA | 244..961 | 39..756 | 3590 | 100 | Plus |
| CG3814-RC | 1011 | CG3814-RC | 210..899 | 67..756 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12875276..12875780 | 756..252 | 2525 | 100 | Minus |
| 2R | 25286936 | 2R | 12875841..12875944 | 253..150 | 520 | 100 | Minus |
| 2R | 25286936 | 2R | 12876101..12876184 | 150..67 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 12877671..12878016 | 743..398 | 410 | 74.6 | Minus |
| 3R | 32079331 | 3R | 14152993..14153147 | 728..574 | 295 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:14 has no hits.
FMO05201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:46 Download gff for
FMO05201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RA | 244..961 | 39..756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:59 Download gff for
FMO05201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RA | 378..1095 | 39..756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:04 Download gff for
FMO05201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3814-RA | 244..961 | 39..756 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:04 Download gff for
FMO05201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12875276..12875779 | 253..756 | 100 | <- | Minus |
| 2R | 12875842..12875943 | 151..252 | 100 | <- | Minus |
| 2R | 12876101..12876183 | 68..150 | 100 | <- | Minus |
| 2R | 12876262..12876290 | 39..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:46 Download gff for
FMO05201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8762781..8763284 | 253..756 | 100 | <- | Minus |
| arm_2R | 8763347..8763448 | 151..252 | 100 | <- | Minus |
| arm_2R | 8763606..8763688 | 68..150 | 100 | <- | Minus |
| arm_2R | 8763767..8763795 | 39..67 | 100 | | Minus |
