FMO05202.5prime Sequence
402 bp (402 high quality bases) assembled on 2008-08-22
> FMO05202.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGGACGTGTTCCTTATGAT
CAGGCGGCAAAAGACCACCATCTTCACGGACGCCAAGGAGAACACAACGG
TGGCCGAGCTGAAGCGAATGATTGAGGGCATACTAAAGGTGCAGCCCGTG
GACCAGCGGTTATACAATCAGGACAACGATGTCATGGAGGACGACAGCAC
GTTGCAGGACTACGGCGTGACGGTGTCCACGGCCAAGGCGCAGGCTCCGG
CACAGCTGGGCTTGACATTCAGGAACGAGGTGGGCGACTTTGAGACACTG
GACATGACACCCTACTCGGCACCACCAGACTTACCCGAAGTCATGAAAAA
CCAAGAGGCCTCGAACGGACAGGAGCAGGTGGCAGCAAGCTTTCTAGACC
AT
FMO05202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloB-RA | 1207 | CG4204-RA | 395..748 | 31..384 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20578913..20579059 | 273..127 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 20578681..20578794 | 384..271 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 20579138..20579233 | 128..33 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:40 has no hits.
FMO05202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:07 Download gff for
FMO05202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-B-RA | 387..752 | 22..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:01 Download gff for
FMO05202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-B-RA | 408..773 | 22..389 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:45 Download gff for
FMO05202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloB-RA | 387..752 | 22..389 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:45 Download gff for
FMO05202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20578677..20578792 | 273..389 | 98 | <- | Minus |
| 3R | 20578914..20579058 | 128..272 | 100 | <- | Minus |
| 3R | 20579139..20579242 | 22..127 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:07 Download gff for
FMO05202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16404399..16404514 | 273..389 | 98 | <- | Minus |
| arm_3R | 16404636..16404780 | 128..272 | 100 | <- | Minus |
| arm_3R | 16404861..16404964 | 22..127 | 95 | | Minus |
