FMO05203.5prime Sequence
1260 bp (980 high quality bases) assembled on 2008-08-22
> FMO05203.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTTACGCTGC
AAATTTTTGAGGCATTTGCAATCATTTTATGTGTATACTTTCTATGGAGT
CGAAGAAGATTTTATATTATGATGCTAAAGTTACCAGGACCAATGGGCTT
TCCGTTTATCGGACTTGCCTTTGAGTACATTCGCCTAAAACGTAAGATAC
GCCTACGTACCATTTTATTTAAAATATATGGAAAAACGGTATTGACTTGG
ATTGGCTTAACTCCCGTCCTGGTGACCTGTGAACCTAAGATCCTTGAGGA
CATTTTCACGTCTCCCAATTGCAGCAACAGGAGTTCTGTGGTGGACAAGG
CCATTTCATCATGTTTAGGACTGGGCCTTCTGACCCTAAAGAATAATCAT
TGGAATGAACGACGAAAACTTTTGTTACCATCGTTTAAGAATAATGCTGT
TCTAAGTTTTGTGCCAGTTTTAAACAATGAAGCCAATTTCCTGGTGACCT
TACTCGCGGAATTTGTCGATGGGGGAGATATAAACTTACTTCCAGAACTC
AATAAATGGTCATTCAAAATAGCCGCTCAAATTACTATGGGTGATGAAGT
GAGAAATCAAGCGAACTACCAGAACGGAAATCTTTTGGAAAGCTACAAGG
CCCTTAACAACCTAATACCCATTGGTGTTGTAATGCCTTGGCTCAGGAAC
AAGTATCTTGGAAAGCTATTTAGCTATGAAAAACGACGACTAGAGGCCGC
AACGCAGTCAAATGCATTCATCAAAGACATAATAGACAAAAAGCTGAGTA
GCACAGATAATAGCTCAGAACCGGCACTAATTGACCGCATCTCAATCTTG
TGAGAATCGGAGAACTTTTCTTATGACGACGTAATGGGGGAATTTTCTAT
TATCATATTTGCCGCATCCGATACTTTATCTATAAACAGTCAACAATGGT
GCTTATCCTGATGGCATGTTTCCTAAATACAAGAAATAATGTATTTGAGA
GGCTAGCAAAGGTGTTTCCTTCAGAGAAGATTCGAAGCCAGTATGCGATC
CTGGAAAATTATGAAGCTGGATCGGGTTTGCATGAAAATATGCGTTAATA
CGTGTCCATTACTGAATAGCAACTTCAATTCATTCCACTTCTACCGATTT
ATATTCGAAGGCTACTTATGATAACTTTTCACCTCATCGATAGATCGACC
AAGGCTATGCCTTATTCGAAACTCTCGCCGTAATAGCGACGAGAGCCGCA
TATTCCATAA
FMO05203.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a5-RA | 1561 | CG15807-RA | 38..1106 | 38..1101 | 4830 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12234233..12234437 | 396..192 | 995 | 99 | Minus |
| 3R | 32079331 | 3R | 12233992..12234177 | 578..393 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 12233387..12233630 | 1024..779 | 850 | 95.2 | Minus |
| 3R | 32079331 | 3R | 12234489..12234647 | 196..38 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 12233685..12233811 | 778..652 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 12233869..12233941 | 651..579 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:48 has no hits.
FMO05203.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:36 Download gff for
FMO05203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a5-RA | 29..1106 | 30..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:03 Download gff for
FMO05203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a5-RA | 29..1106 | 30..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:29 Download gff for
FMO05203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a5-RA | 29..1106 | 30..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:29 Download gff for
FMO05203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12233357..12233630 | 779..1050 | 93 | <- | Minus |
| 3R | 12233685..12233811 | 652..778 | 100 | <- | Minus |
| 3R | 12233869..12233941 | 579..651 | 100 | <- | Minus |
| 3R | 12233992..12234177 | 393..578 | 100 | <- | Minus |
| 3R | 12234237..12234437 | 192..392 | 99 | <- | Minus |
| 3R | 12234494..12234656 | 30..191 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:36 Download gff for
FMO05203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8059079..8059352 | 779..1050 | 93 | <- | Minus |
| arm_3R | 8059407..8059533 | 652..778 | 100 | <- | Minus |
| arm_3R | 8059591..8059663 | 579..651 | 100 | <- | Minus |
| arm_3R | 8059714..8059899 | 393..578 | 100 | <- | Minus |
| arm_3R | 8059959..8060159 | 192..392 | 99 | <- | Minus |
| arm_3R | 8060216..8060378 | 30..191 | 98 | | Minus |
