FMO05205.5prime Sequence
1136 bp (982 high quality bases) assembled on 2008-08-22
> FMO05205.5prime
TAGCATACCTTATACGAAGTTATCAGTCGACATGAGCGGCAAGCGGACAC
GTAGCTTTAAGTGCGCCGTACACCATCGAGATCGTGAAGTCTGCTCCGAA
AACGATTTCCAGCTGGTGCTAAACGAACCGCCACTCTTTCGCAAAATGGT
GCACGCCGTGGCCATGGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACT
ACGCCGATCGCTACACCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTT
ACTCTGGTGGAGCTGGGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGA
GGCGGCGCCAAGGGGACCCATACCCTCGGACTCCATGTTCATCTACCGTC
CCGATAAGCGTCACGAGATCTGGCGCTTCCTCTTCTACATGGTACTCCAT
GCCGGGTGGCTGCATCTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGG
GCTGCCACTGGAGATGGTTCATGGTTCCACGAGGATAGCCTGCATCTACT
TCTCCGGGGTGCTGGCGGGAAGCCTGGGCACTAGCATCTTTGACCCGGAT
GTGTTCCTTGTGGGCGCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCA
CCTGGCCAATGTGCTTCTCAACTATCACCAGATGCGTTATGGAGTCATCA
AGCTGCTTCACATTCTGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATC
TATGCTCGCTATGCTGGCGACGAACTGCAGCTGGGATCATCGAGTGAATT
CCTGGCCATAGATCACGCGGAAACGGCGGGTGCTGTTTCGTATGTGGCCC
ATTTGGCTGGTGCCATTGCTGGCCTAACTATCGGGCTGCTGGTGCTCAAG
AGCTTTGAGCAGAGCTCCACTAGCAGCTGCTCTGGTGGATCGCTTGGAAC
GTACTTGGCGCTGGTGGTCTTCCCAATCGCCTTCACATCATGAATGGATT
TGCGATGTTCATATACGCGTGAGAAGATCCGTGTCACGGAAACCATTTTC
AAAGATTTCCAGTGCAAGCTTCTAGACCATTCGGTTGCGCCGCGGCCCAG
GTAGTGTCCTAATCATATCATAATCTATCTTATTCAACTTAGCTAGTAAT
CCTGTCATAGACTATGCTTTGATCCTACAAATAAAA
FMO05205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stet-RA | 1898 | CG33166-RA | 170..1157 | 31..1012 | 4715 | 98.9 | Plus |
| stet-RB | 2380 | CG33166-RB | 653..1639 | 32..1012 | 4710 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1476582..1476995 | 674..261 | 2070 | 100 | Minus |
| 3L | 28110227 | 3L | 1476179..1476523 | 1012..674 | 1370 | 96.5 | Minus |
| 3L | 28110227 | 3L | 1477050..1477287 | 269..32 | 1160 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:02 has no hits.
FMO05205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:59 Download gff for
FMO05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RA | 161..1157 | 19..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:06 Download gff for
FMO05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RA | 151..1147 | 19..1012 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:33 Download gff for
FMO05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RA | 161..1157 | 19..1012 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:33 Download gff for
FMO05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1476179..1476522 | 675..1012 | 96 | <- | Minus |
| 3L | 1476582..1476993 | 263..674 | 100 | <- | Minus |
| 3L | 1477057..1477297 | 20..262 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:59 Download gff for
FMO05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1476179..1476522 | 675..1012 | 96 | <- | Minus |
| arm_3L | 1476582..1476993 | 263..674 | 100 | <- | Minus |
| arm_3L | 1477057..1477297 | 20..262 | 97 | | Minus |
