Clone FMO05208 Report

Search the DGRC for FMO05208

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:52
Well:8
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42565-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05208.5prime Sequence

459 bp (459 high quality bases) assembled on 2008-08-22

> FMO05208.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGTTGCTACAA
GCGCGTAGACTCCCCGCCGCCCTACTCGGATCCATTCGCCACCGCTCCTC
CAGCGGAGGACGTCATGCAGCAGAACCTGGCGTCGCCCGCACATCCCAAT
CCGGTGATACCCGTGATGGCCCAAACCATGCCGGTGTTGCAGCCCGTAAG
CGTGATGCATCACCAGACGACAGTGCTGGTGGACAATACCCGCCAGGGAA
CGATCTGTCCCCACTGCAACGCTCGGATTCGCCTTCGCGTGGAGCACCAT
CCTACCGGATCAACTTACTGTATGGCGGCGTTGCTCTGCCTATTCCTATG
CTGGCCCTGCGTCTGCGCCCCTTGCTGCTGCAACTGTTGCTACAAGACCT
CCCAGTACTGTCCCAACTGCAACTCCTGCTTGGGTTCGTTTGCAAGCTTT
CTAGACCAT

FMO05208.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG42565-RB 2577 CG42565-RB 1945..2350 36..441 2030 100 Plus
CG42565-RA 700 CG42565-RA 68..473 36..441 2030 100 Plus
CG13511-RB 2577 CG13511-RB 1945..2350 36..441 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22660550..22660861 36..347 1560 100 Plus
2R 25286936 2R 22661069..22661162 348..441 470 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:54:03 has no hits.

FMO05208.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:31 Download gff for FMO05208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42565-RA 68..478 36..446 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:10 Download gff for FMO05208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13512-RA 68..478 36..446 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:43 Download gff for FMO05208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13511-RB 1945..2355 36..446 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:43 Download gff for FMO05208.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22660550..22660861 36..347 100 -> Plus
2R 22661069..22661167 348..446 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:31 Download gff for FMO05208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18548055..18548366 36..347 100 -> Plus
arm_2R 18548574..18548672 348..446 98   Plus