Clone FMO05209 Report

Search the DGRC for FMO05209

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:52
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13041-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05209.5prime Sequence

419 bp (419 high quality bases) assembled on 2008-08-22

> FMO05209.5prime
GCATACCTTATACGAAGTTATCAGTCGACATGTTCAAATTTGTTGCTGTC
ATCGCTCTCCTGGTCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCA
TGTGGTGCACGAGCCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTG
CTCCCTCGGCGGTTTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCG
GTGGTGCAGCCAGTGGTTGCTCCCATCGTGAAGACCACCACCTACTCCCA
TCCCGCCGTTGCCGTCCACGCTGCTCCAGTGGTTCACTCCGTGCCCGTTG
TCCACGCCGCTCCAGTCGTCCACTCTGTGCCTCTGGTCCACTCAGCTCCC
CTCGTCAAGTCGGTGGTGCACTCCGCTCCCCTGGCCTACACCCTGCACCA
CGCAAGCTTTCTAGACCAT

FMO05209.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13041-RA 513 CG13041-RA 68..439 30..401 1860 100 Plus
CG13060-RA 539 CG13060-RA 71..473 30..411 1435 91.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16319028..16319387 401..42 1800 100 Minus
3L 28110227 3L 16320004..16320281 48..325 1345 98.9 Plus
3L 28110227 3L 16320316..16320388 339..411 275 91.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:18:07 has no hits.

FMO05209.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:36 Download gff for FMO05209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 63..443 25..406 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:12 Download gff for FMO05209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 57..437 25..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:58 Download gff for FMO05209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13041-RA 63..443 25..406 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:58 Download gff for FMO05209.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16319024..16319387 42..406 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:36 Download gff for FMO05209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16312124..16312487 42..406 99 <- Minus