FMO05210.5prime Sequence
1166 bp (743 high quality bases) assembled on 2008-08-22
> FMO05210.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGCGTCTGCTTTGGTTGC
TTGCCACGCTGGTGGCTCTAACAAGTGCTGGTATCCTTAAGGACTCTCCC
AAAGAGCGTTATGATAACTTCAGGGTATACAAGCTCACTATCCAGAACAA
AATTCAATTGGCTGCGATCGAGAAAATTGGCGAGCTAACGAAGAAGTACA
ATATTTGGAAGGAGTATGACGAGCGAAGTAGGCAGATTGATATTATGGTT
AGTCCTGGAGAACTTAACCACTTTCAGGAGCTGCTTAAATTCAATAATAT
CAGCAGTGAGCTTATGATCGAGAATGTCCAAGAGCGTATCGACGAGGAGC
AAGTCACGCCGACTGCAGATAGCGCCACCTTCGGCTGGACGAATTACTAC
GAGCTGGAAGAGATTGAGGCTTGGCTGGACGAGATTCTAAATGCTTATCC
CTCGGTGACCGAGGAGTTCATTGTTGGCAAGTCCTACGAGGGGAGAACCA
TTAGAGGCATTAAGATCTCCCACAAGGCTGGCAATCCTGGCATTTTCATC
GAGTCCAACATTCATGCCAGAGAATGGATAACTTCGGCCAGTGCTACATG
GTTCATCAATCAGCTTTTGACCCTCAGAGGATGCCGATGTGCGAAGTTTG
GCCGATAACTATGATTGGAATATAATTCCCCGTGTTCAATGTAGATGGTT
TTGAGTACTCACACAAGAAAGGATCGTATGTGGCGCAAAACACGCCAGCC
ACATGCCACGAAATGCATGCATTGGAGCTGACGCAATAGGAACTTCTACT
CCTATTGGCTCAGAACAATGGGAGCCTCTGACAATCCCTGCAGTGAGACT
TTTTGCTGGGGATACCCTGATCTGACCCTGAAGCCAAGGCCTTGGTCGAT
TACCTTGACCAAATTCAATGACAATTACGGGGAACATATCTTTCCACTCA
TAGGAAAGTATTTGCTTTCTCCCTTACGCACATACCATGATGAATTTCCA
GAAATTAAATGGAATCCTGACACGATTGGCAAGCCTTTGGCCGATGCCAT
TGGAGCACTGCCGAACGAATGTCAACACTTATGACTCTTAGCTGAAGTGC
CTCAGGTGCCACTGGAAACCTTCCGGGAATTGGGGGTTCCAAGAGCCTGG
CACAAAAAAATCGGGT
FMO05210.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18585-RB | 1423 | CG18585-RB | 19..1135 | 32..1146 | 4310 | 93.5 | Plus |
| CG18585-RA | 1358 | CG18585-RA | 19..1135 | 32..1146 | 4310 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7690173..7690556 | 719..334 | 1785 | 98.7 | Minus |
| 2L | 23513712 | 2L | 7690879..7691043 | 196..32 | 825 | 100 | Minus |
| 2L | 23513712 | 2L | 7690682..7690821 | 334..195 | 700 | 100 | Minus |
| 2L | 23513712 | 2L | 7689759..7690109 | 1067..720 | 610 | 87.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:54:00 has no hits.
FMO05210.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:29 Download gff for
FMO05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18585-RA | 14..956 | 27..969 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:54 Download gff for
FMO05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18585-RA | 10..952 | 27..969 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:42 Download gff for
FMO05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18585-RA | 14..956 | 27..969 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:42 Download gff for
FMO05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7690172..7690556 | 334..721 | 98 | <- | Minus |
| 2L | 7690683..7690819 | 197..333 | 100 | <- | Minus |
| 2L | 7690879..7691048 | 27..196 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:29 Download gff for
FMO05210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7690172..7690556 | 334..721 | 98 | <- | Minus |
| arm_2L | 7690683..7690819 | 197..333 | 100 | <- | Minus |
| arm_2L | 7690879..7691048 | 27..196 | 98 | | Minus |
