FMO05211.5prime Sequence
1181 bp (850 high quality bases) assembled on 2008-08-22
> FMO05211.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGACGGAG
CCATCGGTGGCCAAGGATGCTGTGCTGAAGCGCAGCGAGGCTCTGGCGGA
AAACACGCCCCAAGTTAGTGGCTACGATTTCAACGAAGGCTTAGACTACA
GTAAGCTCTTCGAATCCTATGTGAACACCGGGTTTCAGGCCACGAATCTT
GGCCTGGCCATTCGGGAAATTAACAGAATGCTGGATTGCAGGGACCAGCC
ATTGGAAGCGGACCAAATAGACAGCCATGAAACAGACGACTTCATCCGTC
GAAGAAGCAAGTGCACCGTATTTTTGGGCTACACATCCAACTTGGTTTCG
TCCGGACTGCGAGAGACCATTCGCTTTCTGGCCGAGCACCGTATGATCGA
CTGCATTGTGACCACAGCTGGCGGCGTCGAGGAGGACTTCATCAAGTGCT
TGGCTCCCACGTTCATGGGTTCATTTGAGCTGAGTGGCAGGGATCTCCGC
GAGCGTGGAATCAACAGAATTGGCAACCTTCTGGTGCCGAACGATAATTA
CTGTAAGTTCGAGGACTGGGTGATGCCGCTGCTGGACGAGATGCTGGAGG
AGCAAAAATCCCAGGGAACTATCTGGTCGCCGTCGAAGATTATTCATCGG
TTGGGCGAACGGATTGGCGATCCTAGTTCCATTTACTATTGGGCTGCCAA
GAATCAAATACCAGTCTTTTGTCCCGCCTTGACGGATGGCAGTCTGGGCG
ACATGATGTACTTTCACTCCTTTCGACCACCTGGACTCGTGGTGGACATT
CTGTCCGATCTGCGGATGCTCAACACCCATGGCTGGTCAAGGCGGTCAAC
AGTGGGGATGATCCTCGTGGGGCGGCGGGCGTATATCAAGCATCACAATT
TGTAATGCCAATCTGAAGGCGCAATGGAGCGGGATTTACTCCAGTGGTTC
ATTTAATAACTGGCTCGGAATTGAACGGCAGCAATAAGCGGCGCCTCGGA
CCGGAAGAGGCCTAATGTGGGGGCAAAATCAGGAAGAGAGCCACCCTGGT
TAAGGGGATGCCAAGGCTAACCTGGTCTTTCCGTTGGATTGGGGGTGAAC
TTTCGCCAAGCGCATCACTGTGCCCGCGAAGAACTGCCAGAGAAATAACA
CAGGCCAGTCTTCTCGACCATTCTTTGTGGC
FMO05211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8005-RA | 1227 | CG8005-RA | 86..1170 | 39..1138 | 4495 | 95.4 | Plus |
| CG8005-RB | 1216 | CG8005-RB | 86..1159 | 39..1138 | 4320 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8198541..8199434 | 230..1138 | 3050 | 93.1 | Plus |
| 3L | 28110227 | 3L | 8198292..8198483 | 39..230 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:35:40 has no hits.
FMO05211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:24 Download gff for
FMO05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 86..1002 | 39..969 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:56 Download gff for
FMO05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 84..1000 | 39..969 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:36 Download gff for
FMO05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8005-RA | 86..1002 | 39..969 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:36 Download gff for
FMO05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8198292..8198483 | 39..230 | 100 | -> | Plus |
| 3L | 8198542..8199266 | 231..969 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:24 Download gff for
FMO05211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8191392..8191583 | 39..230 | 100 | -> | Plus |
| arm_3L | 8191642..8192366 | 231..969 | 97 | == | Plus |
