FMO05212.5prime Sequence
1234 bp (927 high quality bases) assembled on 2008-08-22
> FMO05212.5prime
TATAGCATACCTTATACGAAGTTATCAGTCGACATGAATATAAATCTGCC
GAATTTCAATGTGAAGAACCTGGTGAAGGAGGCGGGCAGCACAATATCAC
GAGTGGTGCAACTCACGGAGGAGAAACTGGGCACCACGGAGCGCACCGAG
TACGACTTGCACTTCCAGAATCTCGCCGAGCGGGCTGATGTGACCAAGAC
ATGGACGGAGAAGATAGTGCGCGACACAGAGTCGGTGCTGATACCCAATC
CTCAGAACCGGGTCGAAGACTTCATCTTCGAGAAGATTGAAAAGTCGAAG
CCAAAAAGGTTGAGCAACCTAGAGCACCTGGCTCTGGACATGATCGAGGC
TGGGGGCGATTTCGGGCAGGATTTACCCTATGGTCAGGCTCTGATCAAGG
TCGGCCAAGCGGAACAGAAACTGGGCCAGTGCGAGCACGACTTTATAGCC
ACCTCGGGCATTTGCTTTACACAGCCGTTGCGCAAGTTCCTAGACGGCGA
AATGAAGACAATTGGCAAGGAGCGAGGCATCCTGGAGACCAAGCGCCTGG
ATCTGGACGCCTGCAAGAACAGGGTGAAGAAAGCGCGCAGCATGCTGGGT
CAGCAATCGAAAGATGGCATCTCGCCAGAGGCCGTCTTGGAACAGGCGGA
ACGGGACTTGCGGGTGGCTCAGCCGAGTTCGACCGGCAGGCGGAGATTAC
CAAGCTGCTGCTGGACGGGATCAGCACATCGCAGGCATCTCATTTGCGCC
ACTTGCACGCCTTCATCCAGACGCAAGTGCGCTACTACAAGCAGTGCGGC
GATGTCATGGAGCAGCTGCAGCGTGAACTGGCCCAACTTGGAGGCCCCAC
GCCCAAACATTCCGCTCGACGTGAACGAGGCCAGGTGCCAGCAAGTTCAA
CATAATCGTCCGGAGCCGCAGCCCGTGGTCCTTGGCAACAATCACTTCTG
CCAATAATGGCTGCCAACCGCCCATAAGCTTATCCAGCCCATGCACGTCA
GCACGGATCGAATGCAAAGGCATCGCTTCCTTTGCTCTTCCAAGCCAGAA
CACACCTTAGCTTAATTTGACGCCAATGGAGGGGATTCTCGGGACGGATG
CTCCCATTAAACAGGAATATGTACCGCAAACGGGTCATTGAGCTCGGGCC
CCCCGCCATTTGTATGCTCACAAAGACCGATGTCCCCTGCAAGCTTTCAT
GAACACTTCGTTTGTCGCCCGCGGATCGCAGCTA
FMO05212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RA | 2226 | CG9834-RA | 114..1224 | 34..1141 | 4630 | 95.5 | Plus |
| EndoB-RC | 2190 | CG9834-RC | 114..914 | 34..833 | 3965 | 99.8 | Plus |
| EndoB-RD | 2154 | CG9834-RD | 114..689 | 34..609 | 2865 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19309816..19310313 | 609..112 | 2490 | 100 | Minus |
| 2R | 25286936 | 2R | 19309395..19309585 | 833..644 | 905 | 99.5 | Minus |
| 2R | 25286936 | 2R | 19308619..19308809 | 1037..840 | 430 | 89.4 | Minus |
| 2R | 25286936 | 2R | 19310476..19310552 | 110..34 | 385 | 100 | Minus |
| 2R | 25286936 | 2R | 19309662..19309699 | 646..609 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:17 has no hits.
FMO05212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:00 Download gff for
FMO05212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 114..1164 | 34..1089 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:14:57 Download gff for
FMO05212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 141..1191 | 34..1089 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:52 Download gff for
FMO05212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoB-RA | 114..1164 | 34..1089 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:52 Download gff for
FMO05212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19309393..19309583 | 646..836 | 98 | <- | Minus |
| 2R | 19309663..19309698 | 610..645 | 100 | <- | Minus |
| 2R | 19309816..19310313 | 112..609 | 100 | <- | Minus |
| 2R | 19310475..19310552 | 34..111 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:00 Download gff for
FMO05212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15196898..15197088 | 646..836 | 98 | <- | Minus |
| arm_2R | 15197168..15197203 | 610..645 | 100 | <- | Minus |
| arm_2R | 15197321..15197818 | 112..609 | 100 | <- | Minus |
| arm_2R | 15197980..15198057 | 34..111 | 98 | | Minus |
