FMO05213.5prime Sequence
1021 bp (917 high quality bases) assembled on 2008-08-22
> FMO05213.5prime
GCATACATTATACGAAGTTATCAGTCGACATGGTATTATGCTCATTAAAA
TTAAGTTGGGCAATCATGGCTGAGGAGACAATAATTCTCATTTTATTAGT
GTTGGTTATGCTTGTGGGGTCTTATTTGGCAGGGAGCATACCGATGCTGA
TGAAATTAAGCGAGGAAAAGCTAAAATGTGTCACTGTGCTGGGAGCTGGA
TTGTTAGTGGGAACTGCTCTCGTTGTTATTATTCCGGAGGGCATTCGATC
ATTGTATGTGGGGAGTGGCCAATCCCAAAAACGGACATCAGTTCCGGAGC
AACCAGATTACTCACAGACCATTGGACTTTCTCTTGTGCTTGGATTTGTC
TTCATGATGTTGGTGGACATCTCTCAGCGGAAGAGTAATGTTGGAAGTAA
TAAAAAAAACAATGCCACACTAACTCTTGGATTGGTTGTGCATGCCGCAG
CTGATGGAGTTGCATTGGGAGCAGCTGCCACCACTAGCCATCAAGACGTT
GAGATAATTGTATTTTTAGCTATAATGCTTCATAAGGCACCAGCAGCATT
TGGATTAGTGACATTCTTACTGCACGAAAAAGTAGACAGACATCAAAATT
CGCAGACACCTAGTCTTATTTTCCCTGTCGGCTCCCCTTATGACTATTTT
AACGTATTTTGGGATCGGACAGGAGCAGAAGGACACGTTAAATTCCGTGA
ATGCCACTGGTATAGCTATGCTATTCTCCGCTGGAACATTTTTGTACGTA
GCAACTGTGCATGTTTTACCAGAGCTTACCCAGGGGGATTTACGAAAGCT
ATCAGCATGATTATTGTTTGCTAGAGGATCCTCGAGGTGTTGCTACGAAT
GATATAAATGGAAGCCATAGTTTTCAAGCCCTAAATATAGTGAATTGGTA
ATTCTTGATTTGCGGCGCACTGCTACCCCTTAATAATAACATTTTGGACA
TTATTCACGCAGCTTTCTCAGACCATCGGTTTGGCCGGCCGGCCCAGGTA
GGTGTCACTATCCATATCCTT
FMO05213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip102B-RF | 2995 | CG2177-RF | 206..1126 | 30..951 | 4345 | 98.5 | Plus |
| Zip102B-RE | 2821 | CG2177-RE | 32..952 | 30..951 | 4345 | 98.5 | Plus |
| Zip102B-RB | 2870 | CG2177-RB | 213..1001 | 162..951 | 3685 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 312805..313302 | 944..447 | 2100 | 97.4 | Minus |
| 4 | 1348131 | 4 | 313357..313644 | 450..163 | 1440 | 100 | Minus |
| 4 | 1348131 | 4 | 313747..313882 | 165..30 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:49 has no hits.
FMO05213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:19 Download gff for
FMO05213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-RE | 32..961 | 30..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:16 Download gff for
FMO05213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-RA | 27..956 | 30..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:46 Download gff for
FMO05213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip102B-RE | 32..961 | 30..962 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:46 Download gff for
FMO05213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 313357..313642 | 165..450 | 100 | <- | Minus |
| 4 | 313748..313882 | 30..164 | 100 | | Minus |
| 4 | 312790..313298 | 451..962 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:19 Download gff for
FMO05213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 333416..333924 | 451..962 | 96 | <- | Minus |
| arm_4 | 333983..334268 | 165..450 | 100 | <- | Minus |
| arm_4 | 334374..334508 | 30..164 | 100 | | Minus |
