FMO05215.5prime Sequence
1188 bp (562 high quality bases) assembled on 2008-08-22
> FMO05215.5prime
CTTCGTATAGCATACCTTATACGAAGTTATCAATCGACATGGACTTTCAG
CGAAACGATGCTATGCTCATGGAAATTCTGCAGGATCGGAAAACTATTAC
AGGTTTCCTGGACTCCATTTTCGGATTTCTGCGACGCAACACCGACTTTT
ATCACACGAAACGCGATGAAGCGGATAAAATAGGCTTCCCCAAAGGCGTG
AGGGATCATATTCTATATGGCGCCATGCAGCGCTACGATCCGGATTGCTT
GCTACAATCCCTGACCGCGGAAGGCGGTGCAGATGATGGAGAAACGGCTC
CGCCTGCCGTCGAAGAAGTGGTCCTGGAAAGCGAAGATGGTCCTCAGGAC
GAGGAAATGAAACCCATAGAGAGCCAGCCGCCACAAAAAGGGAAGGAGCA
GTCAAAGTTCTCCCCCAGCGACTACAAAAACGGAAATGTGTTCGAAACGC
ACTGCTGGTCACAAACCCTCAAGGATGTGGAGGTGCAGGCTCTGCTTCCC
AAGGATCATCAAACGGCGAAGAAGCTGCACATTTCAATTCAGGCCCAGCA
CATCAAAGTGAGCAGCAAGCATAGCCCAGAGACGATCATCCTCGAGGGAA
ACCTGAGCCAGCGGATTAAACACAAGGAGGCGGTGTGGACAATTGATCAG
AACCGATTGATCATAAGTTACGATAAAGCAAAGGAGCTCTGGTGGGATCG
GCTCTTCGAAGGTGATCCAGAAATCGATTCCCAGAAGATTGAATGCGAAC
GCTATATATATGATTTGCCGGAGGAAACCCAGGCCACCATAGAAAAGCTT
AGGGTCCAGCAGTTGGCAGCAGACAGCACAAATGAAATTCAGACCTCAAG
TCCGACCAAGCTATAAACCTGGATCGCCTGAAGCTGCCTGGATGCCGAAG
TTCGACGTTTAAAGGACAGCCCTTGATCTTCTATCGTAAGATGATGCAAG
CATTTCTAGACATTCGTTCGCGCGCTACAGTAAGTGTCATATCATATCAT
ATCATATCATATCCTACTAGCTAGGAGATCTGTCATGACTATGCTTGATC
TCACAATAAACGCTGACGCACGAGCGATCTGACGATCGATGGAGTCTGAG
TCTACTGATCTCATGGATCAGCATCGAATCAATAGCTGCTGCCTTCGAAT
TGAATCTAGCTTCCCACTGAACTTGACGCGTGAACTGA
FMO05215.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31251-RA | 1060 | CG31251-RA | 71..982 | 39..941 | 4245 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17684155..17684687 | 672..140 | 2620 | 99.4 | Minus |
| 3R | 32079331 | 3R | 17683837..17684096 | 924..672 | 925 | 95.8 | Minus |
| 3R | 32079331 | 3R | 17684745..17684845 | 139..39 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:20 has no hits.
FMO05215.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:51 Download gff for
FMO05215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31251-RA | 66..986 | 31..944 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:20 Download gff for
FMO05215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31251-RA | 62..982 | 31..944 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:08 Download gff for
FMO05215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31251-RA | 66..986 | 31..944 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:08 Download gff for
FMO05215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17683814..17684095 | 673..944 | 95 | <- | Minus |
| 3R | 17684155..17684687 | 140..672 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:51 Download gff for
FMO05215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13509536..13509817 | 673..944 | 95 | <- | Minus |
| arm_3R | 13509877..13510409 | 140..672 | 99 | <- | Minus |
