FMO05216.5prime Sequence
590 bp (590 high quality bases) assembled on 2008-08-22
> FMO05216.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCACGACAA
GCCTCTCGTTTGGACGCCAAGAAAGTGAACTCGGAGTTCCTGACACTCAC
CTACGGAGCACTCGTCACCCAGATGCTGCGCGACTTCGAGAACGCCGAGG
ACGTGAACAAGCAGCTGGAGCGAATCGGCTACAACATGGGCATGCGACTG
ATCGAGGACTTTCTGGCCAGGACATCGGCGCCACGCTGCCTCGAGATGCG
CGAGACGGCCGATCGCATCCAGCAGGCGTTCCGCATCTACCTGAATATCC
AGCCCACCATCTCGAACTGGTCGCCGGCCTCCGATGAGTTCTCCCTGGTA
TTCGATAGCAATCCGCTGACGGAGTTCGTCGAGCTGCCGCCTGACCTGAC
CAATCTGCGCTACAGTGCCATACTCAGCGGCTGCATCCGCGGCGCCCTGG
AGATGGTGCAGCTGGAGGTGCAGTGCTGGTTCGTGCAGGATCAACTGAAG
GGCGACAATGTGACGGAACTGCGCGTTAAGTTCGTGCGGCGTCTAGAGGA
GGTCATACCAGCTGGCGAGGATGCAAGCTTTCTAGACCAT
FMO05216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bet3-RA | 1125 | CG3911-RA | 106..639 | 39..572 | 2670 | 100 | Plus |
| MTF-1-RF | 3182 | CG3743-RF | 2841..3182 | 489..148 | 1710 | 100 | Minus |
| MTF-1-RF | 3182 | CG3743-RF | 2671..2748 | 561..484 | 390 | 100 | Minus |
| Nf-YA-RA | 2055 | CG3891-RA | 106..144 | 39..77 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9439149..9439561 | 489..77 | 2065 | 100 | Minus |
| 3L | 28110227 | 3L | 9438968..9439056 | 572..484 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 9442124..9442162 | 77..39 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:45:43 has no hits.
FMO05216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:53 Download gff for
FMO05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet3-RA | 96..639 | 31..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:22 Download gff for
FMO05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3911-RA | 82..625 | 31..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:11 Download gff for
FMO05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet3-RA | 96..639 | 31..572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:11 Download gff for
FMO05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9438968..9439051 | 489..572 | 100 | <- | Minus |
| 3L | 9439150..9439560 | 78..488 | 100 | <- | Minus |
| 3L | 9442124..9442172 | 31..77 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:53 Download gff for
FMO05216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9432068..9432151 | 489..572 | 100 | <- | Minus |
| arm_3L | 9432250..9432660 | 78..488 | 100 | <- | Minus |
| arm_3L | 9435224..9435272 | 31..77 | 91 | | Minus |
