FMO05217.5prime Sequence
653 bp (653 high quality bases) assembled on 2008-08-22
> FMO05217.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGACTACACCA
CAGGATCTTGCCCTTGCCCACTCTCTTGCTCAAAGACCTCCGACCGATAG
CAGTGAGGCCAAGGAGCAGGAGGCCGGCGAATCGGACAACCTGCCCAACC
TGTGCACTTTGTCGCTGGACGAACTGAAACAGCTGGACAGGGATCCCGAG
TTCTTCGAGGACTTCATCGAGGAGATGTCCGTGGTGCAGTACCTGAACGA
GGAGCTCGATTCAATGATGGACCAGGTGGAGATTATATCAAGAGAGAACG
AGTGCAAGGGCATTCATCTGGTAGAGCTGAAGCGCCGACTCAGCGACGAT
TTTACAGCTTTAAAAAACCTAGGCGAGAAATGCGACCGGCTGAACAAGAA
GTACTTCAAGAAGTCGGATGAATACGCGCCTCAGCATATCAGGGAGCTTC
TTCAGATTGCAGCTTCCAATGCCGATGGCGACTGCGATCGTCACGTGGAG
CACTTCCTGAACGGAAAGACCGACGTGCAGACTTTCCTCAACACGTACCA
GTGGTCGAAGAAGATCAGTACCGAGCGCAAGGCCAAAGAGGAGCGCCTGG
GCACCCAGCTCAGTGCTCTGGAGCGGGCCGGTATCGCAAGCTTTCTAGAC
CAT
FMO05217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(r)-RF | 1294 | CG17828-RF | 269..868 | 36..635 | 3000 | 100 | Plus |
| mod(r)-RC | 1332 | CG17828-RC | 307..906 | 36..635 | 3000 | 100 | Plus |
| mod(r)-RA | 1343 | CG17828-RA | 318..917 | 36..635 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 621891..622151 | 36..296 | 1290 | 99.6 | Plus |
| X | 23542271 | X | 622433..622625 | 443..635 | 965 | 100 | Plus |
| X | 23542271 | X | 622207..622359 | 292..444 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:56:51 has no hits.
FMO05217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:21 Download gff for
FMO05217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(r)-RA | 313..924 | 31..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:24 Download gff for
FMO05217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(r)-RA | 307..918 | 31..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:26 Download gff for
FMO05217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(r)-RA | 313..924 | 31..643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:26 Download gff for
FMO05217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 622434..622632 | 444..643 | 98 | | Plus |
| X | 621886..622146 | 31..291 | 99 | -> | Plus |
| X | 622207..622358 | 292..443 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:21 Download gff for
FMO05217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 516467..516665 | 444..643 | 98 | | Plus |
| arm_X | 515919..516179 | 31..291 | 99 | -> | Plus |
| arm_X | 516240..516391 | 292..443 | 100 | -> | Plus |
