FMO05220.5prime Sequence
540 bp (540 high quality bases) assembled on 2008-08-22
> FMO05220.5prime
CTCCAGTGCAACTAAAGGGGGGATCTCGAGGGATCCATAACTTCGTATAG
CATACCTTATACGAAGTTATCAGTCGACATGTTCAAACTCTCGGAGCTGG
TGCGCTGGCTGGGGCTCACCGAGTTCGAGATTCTGGTCAATCTGTGCGGC
CTGCTGGTGTTCACCATCACGCTGACCGTCAAGCTCCATCTGCAGGCCAG
GGCCGGACCCGGTGGCATACTCCCGGAGCCCATGGGCGACTGGTTCACCG
TCTTCAGCCCCCTGTTCTTCATCGACATCTGCAACGCGTACTTTTGCGTC
ATTGTGGGCATCCGCATGTACCTGGACTCTAACAACAAGCGCAAAGCCCT
GCATCGCTTCATGTGGAGCACGTATTTCCTGGTGCTCATCGCCATCTTCA
AGTACCTGCTCTGCCTGAAGCTATCCAGCAAGACGGGCCTCGAGTATTCG
GAGGTCTTCTCGCCGATCTTCGTTCTGTTGCAGCTCGTGGCTGTGCGCGC
CTGCCAGTTGCCCAACTCCATCGCAAGCTTTCTAGACCAT
FMO05220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpp20-RB | 1395 | CG33931-RB | 603..1047 | 78..522 | 2225 | 100 | Plus |
| Rpp20-RA | 1244 | CG33931-RA | 603..1047 | 78..522 | 2225 | 100 | Plus |
| CG33932-RB | 1395 | CG33932-RB | 603..1047 | 78..522 | 2225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19745106..19745550 | 78..522 | 2225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:02:05 has no hits.
FMO05220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:28 Download gff for
FMO05220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpp20-RA | 597..1050 | 71..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:27 Download gff for
FMO05220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpp20-RA | 595..1048 | 71..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:45 Download gff for
FMO05220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33932-RB | 597..1050 | 71..526 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:45 Download gff for
FMO05220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19745103..19745553 | 73..526 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:28 Download gff for
FMO05220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19639136..19639586 | 73..526 | 98 | | Plus |
