Clone FMO05221 Report

Search the DGRC for FMO05221

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:52
Well:21
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31855-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05221.5prime Sequence

380 bp (380 high quality bases) assembled on 2008-08-22

> FMO05221.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCAGTACGAGAC
TTTATCAAGGGTCTGCCCATACACGATTCGAGCAATTTTACCCATTTGAG
CAACGAACATGGAATTCGAACGTCGCAGAAGCGTGCCTCCGTCTACCTGC
CCACCGAGGATGAGCATTCAGAGCAGCTGATCGTGATGGACAAGCGATGT
GTCCTGCTGCGCTACCTCACTCAGCAGTGGGACAAAAAGACGCTTCAGCG
GAAGAGGGAGCACGGCGGCGATTCGGGAAATGGCAACGGCAACAGCTCCA
CGCCCAACGGCAACAGCACCAACAGCAAAAAGCGCCCGCGCTTGGACCCC
AACGAGCTGAACGCAAGCTTTCTAGACCAT

FMO05221.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-RB 1126 CG31855-RB 198..524 36..362 1635 100 Plus
CG31855-RA 1064 CG31855-RA 136..462 36..362 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13369401..13369727 36..362 1635 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:59:37 has no hits.

FMO05221.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:37 Download gff for FMO05221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 130..468 29..369 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:29 Download gff for FMO05221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RB 203..541 29..369 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:02 Download gff for FMO05221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 130..468 29..369 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:02 Download gff for FMO05221.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13369395..13369733 29..369 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:37 Download gff for FMO05221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13369395..13369733 29..369 98   Plus