FMO05222.5prime Sequence
1240 bp (835 high quality bases) assembled on 2008-08-22
> FMO05222.5prime
ATACATTATACGAAGTTATCAGTCGACATGGTACGCAGCCGTCGTAGTGT
GTCCAAGGAGGATGCCGTCTCTCTGCTCACAGACAGCGGCATATCGCTGT
CTTCGCCGCCGGCGGCGAGGGAATCCTCACCAGGCCCTACGCTTGCGATC
AAAAGGAGGAAGAGCAGCTTGGCAAGTCTGCGCGATGCTTGTGTGGACGA
GGAGGAGGACGACGGCGGAGAGCAGGACTCAAAGGATGATGATTACGTGC
AACCGCAGCTTAAGAAGTCTGCCCGAAAGGGCGAACCGGTGAAACGCAAG
CACCATGTCTGCAGTCAATGCTCCAAAGAGTTCGGTGGCAAGACGGATCT
GCAGCGCCACATGCTTATCCACTCGGACGAACGACCGCACAAGTGCAAGG
ATTGTGGCAAGAGCTACCGCCAGGCGGTCAACCTGAAAAATCATATCACC
ACCGCCCACGAGCATCGGAAACAGTTCGTTTGTTCCCAGTGCCCAAAATC
ATTCGCCCTCAAGGAGCGCCTGCGGCTCCACATGCGCCTCCACTCTGGCG
AGAAGCCCTATCCTTGCGACCTCTGCGACAAAAAATTCGCTCGAGGAGGT
CAACTGCAACAGCACATGGTTTCTCACCACAAGACGAGTATCCAGCAGTT
CAACTGCACTAAGTGCTCGGCCAGCTTCTCAACCAACGCCATTTACGGGT
GCACATGGAGCCGACACTAGCAGTGCATGGAGCACCGGTGCAGCATCCTG
TGAGAACCAATTCGCCAACGAGCTGGCCCTGCCGAGCGCACATAAAACCA
GGAGCACCAACAAGCTGACGCAATTTGAGTGCGAAATTATGCCATAGAAT
GATCGAACCGGACGAGGATTTGGCCACTCACATGCAGAGGCCACACCGCT
GTTAAGACCCACGTCTGCGAGGTGTGCAACCCTTATTTCCCCCCGAAAAG
CTAGTACCATGTCCATATGCGAATGCCAACGGAAATCGGCCTCCTGCAAT
GTATGGATCTGGCCACCATACCTTTGCCATTCAAACCGTTACTAAACTGC
CACATCCGAAAGCCAACGGAGAAAATCTTTCCCTCGCCAACGTGTGTCAA
GACACAATACCTTTCTCACTTGCCACCTTAGAAACCCTAGTAAAAGAATA
TACCAACCGCAAAGCCCTACATGGCCAAGCTGCCACAGATTCTTAGAATC
AAGGGGAACGTCTTAGTCCAGATTTAGACACACTCCGTTG
FMO05222.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11247-RC | 2564 | CG11247-RC | 423..1449 | 28..1063 | 4415 | 96.2 | Plus |
| CG11247-RA | 2803 | CG11247-RA | 662..1688 | 28..1063 | 4415 | 96.2 | Plus |
| CG11247-RB | 2728 | CG11247-RB | 587..1613 | 28..1063 | 4415 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21726163..21726738 | 603..28 | 2865 | 99.8 | Minus |
| 3L | 28110227 | 3L | 21725584..21725950 | 976..604 | 1290 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:58 has no hits.
FMO05222.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:30 Download gff for
FMO05222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RB | 580..1542 | 20..988 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:13 Download gff for
FMO05222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RC | 413..1375 | 20..988 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:46 Download gff for
FMO05222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RB | 580..1542 | 20..988 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:46 Download gff for
FMO05222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21725571..21725950 | 604..988 | 93 | <- | Minus |
| 3L | 21726163..21726745 | 20..603 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:30 Download gff for
FMO05222.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21718671..21719050 | 604..988 | 93 | <- | Minus |
| arm_3L | 21719263..21719845 | 20..603 | 99 | | Minus |
