FMO05223.5prime Sequence
1278 bp (807 high quality bases) assembled on 2008-08-22
> FMO05223.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGAAGTTCAGGAGTT
CTGCGAAAATATGGAGGAGATCGAAGATGAAAACTACGACGAGGAGAAGT
CAGCTAGAACCTCGGATGAAAATCGCAAGCAAAATCACAGCGAGATCGAG
AAGCGGCGTCGGGACAAGATGAACACGTACATCAACGAGCTCTCCTCCAT
GATTCCCATGTGCTTTGCGATGCAGCGAAAGCTGGACAAACTGACTGTGC
TCCGGATGGCAGTGCAGCATCTGCGAGGGATCCGTGGCAGCGGCAGCTTA
CATCCATTCAACGGATCCGATTACCGGCCTAGCTTCCTGTCCGACCAGGA
GCTCAAGATGATTATCCTGCAAGCGTCGGAGGGATTCCTGTTCGTGGTGG
GTTGTGACCGAGGACGCATCCTGTACGTTTCCGATTCGGTGTCCAGTGTG
CTGAACAGCACCCAAGCGGACCTGCTGGGACAGAGCTGGTTCGACGTCCT
GCATCCGAAGGACATAGGCAAGGTTAAGGAGCATCTATCCTCACTGGAAC
AGTGTCCCAGGGAAAGGCTTATCGATGCGAAGACCATGTTGCCCGTTAAG
ACCGACGTTCCACAGAGCTTGTGCCGCCTGTGTCCGGGTGCCCGGCGCTC
CTTCTTCTGCCGCATGAAGCTGCGCACTGCCAGCAACAACCAGATCAAGG
AGGAGTCCGATACGTCCTCCAGCTTCCCGGAGCTCCACGAAGCGCAAGTC
CAGACTGACTACGGGCCAAAGTACCGGGTTATCCAGTGCACGGGCTTACC
TCAAGTCCTGGAACACCCATCAAGGAACGAGGACAAGAACGCCGACAGCA
ACAAGCAGACACGAAATCTATCCTGCCTTGGGGCATTGGGTCGATTCCGC
CCAACGTTCGCAACTCCACATACCCGCCTCTGTTGAAAATTCACCCGAAT
ATATCGGGACGGGCTTCTACATCTCCCGCCACTCCGGGCGAGGGCAGGTC
CCTGTTCATAGCCACGGGCCACCCTCCTGGATTGGTTTCCTGGCTTCAGA
GATCCTCGGACCATCTTCCTCATGTATTTCCAAAACAATACATCCCTGGC
TGAGGAGTCCTCAAATGGGGATGCGTGTCGGAAACGGGTACCCTCTAGTC
TACGCGTTCTCGGTGACAGAAAACATCTACATTTCATGTGTACATGGTGG
GGCTCTCGAATCCGTGAAAATCAAATGTCATTTATATCGCCCGCAGTACT
GCTGGAGTTTGCTATTTGAAGGATCGAT
FMO05223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyc-RA | 1625 | CG8727-RA | 165..1269 | 34..1134 | 4415 | 94.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19814807..19815261 | 583..129 | 2260 | 99.8 | Minus |
| 3L | 28110227 | 3L | 19814314..19814736 | 1011..584 | 1275 | 92.3 | Minus |
| 3L | 28110227 | 3L | 19815420..19815496 | 129..53 | 385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osvaldo | 1543 | Osvaldo OSV 1543bp | 1426..1480 | 805..859 | 113 | 67.3 | Plus |
FMO05223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:20 Download gff for
FMO05223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 163..1196 | 30..1068 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:15 Download gff for
FMO05223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 163..1196 | 30..1068 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:13 Download gff for
FMO05223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 163..1196 | 30..1068 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:13 Download gff for
FMO05223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19814307..19814736 | 584..1016 | 92 | <- | Minus |
| 3L | 19814807..19815261 | 129..583 | 99 | <- | Minus |
| 3L | 19815421..19815495 | 54..128 | 100 | <- | Minus |
| 3L | 19815755..19815776 | 30..53 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:20 Download gff for
FMO05223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19808855..19808876 | 30..53 | 91 | | Minus |
| arm_3L | 19807407..19807836 | 584..1016 | 92 | <- | Minus |
| arm_3L | 19807907..19808361 | 129..583 | 99 | <- | Minus |
| arm_3L | 19808521..19808595 | 54..128 | 100 | <- | Minus |
