FMO05225.5prime Sequence
693 bp (616 high quality bases) assembled on 2008-08-22
> FMO05225.5prime
ACATTATACGAAGTTATCAGTCGACATGAGCATGACACCGCCGCCGGATC
AAAAGCTGGACGATGATCAGAAAGCTGAAAGGGTTAGCGTCATCATGCGG
GTCAACAGTTCTGGCGCTGTCTCTTCTAGCAGCCAAGACGAGAACTCATC
TAGTTTCACCTCCTGCTGTAGTTCCTCTTCCAACACAAACACAAGTACAA
GTTCAGTACCACCCACTGTGGAGGACGACTATCCAGAGGCCAATGTGTGG
CGCAATCTCAAGTTCAAAATGAACAGAAAGCGTGCTGCAGAAGTGGCACT
ACCCCCAGTACAAACACCCGAGACACCAGTTGCGAAGCTTGTAACGCCAC
CTGCTCCAGCGGAATGCATCAAGGAGGAGGAAATAAAACCTATTCTAACA
CCGATATATGTTAGCCCAGTAGCTTCGTCTGCCAGCCAACTTATCCTGCT
CAGCACAGTGGCCGCCCAACAGAGCCCCACACCCGTACCCAAAACGCCAA
CATGTCCGAGGAGAAACTAACAACCAGAATTACGGCCGCCCAGGCGCGGC
CACCAAAAGTCGCATCTACGAGTGCAGTTTCCGATTGCGGCAAGAATTAC
TTCAAAAGCAGTCATCTGAAGCCCACAGAGGGTTCACACGGCGAGCGACC
CTTTATTGCAGTGGGGAGAACTGGTGACAAAAGATTCCTCCGT
FMO05225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbt-RC | 2361 | CG4427-RC | 777..1445 | 26..687 | 3000 | 97.5 | Plus |
| cbt-RB | 3243 | CG4427-RB | 1659..2327 | 26..687 | 3000 | 97.5 | Plus |
| cbt-RA | 2041 | CG4427-RA | 457..1125 | 26..687 | 3000 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 477393..478030 | 656..26 | 2805 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:40 has no hits.
FMO05225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:24 Download gff for
FMO05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RA | 457..1131 | 26..693 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:36 Download gff for
FMO05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RB | 1017..1691 | 26..693 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:22 Download gff for
FMO05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RA | 457..1131 | 26..693 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:22 Download gff for
FMO05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 477356..478030 | 26..693 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:24 Download gff for
FMO05225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 477356..478030 | 26..693 | 97 | | Minus |
