FMO05226.5prime Sequence
294 bp (294 high quality bases) assembled on 2008-08-22
> FMO05226.5prime
CCTTATACGAAGTTATCAGTCGACATGTTGATCAAAGTGAAGACCCTGAC
CGGCAAGGAAATCGAGATCGACATTGAGCCCACGGACAAGGTAGATCGCA
TCAAGGAGCGCGTGGAGGAAAAGGAAGGCATTCCGCCCCAGCAACAGCGT
CTTATTTTCTCCGGCAAGCAAATGAATGACGATAAAACCGCGGCGGACTA
CAAAGTGCAAGGTGGATCCGTTCTTCACTTGGTATTGGCTCTGCGAGGAG
GTGATTCAATCCTAACACCTTGTGTGGCAAGCTTTCTAGACCAT
FMO05226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd8-RB | 612 | CG10679-RB | 123..374 | 25..276 | 1260 | 100 | Plus |
| Nedd8-RA | 471 | CG10679-RA | 123..374 | 25..276 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18951406..18951539 | 174..41 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 18951244..18951346 | 276..174 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:51:01 has no hits.
FMO05226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:37 Download gff for
FMO05226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 115..379 | 17..283 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:37 Download gff for
FMO05226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 1..255 | 25..280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:48 Download gff for
FMO05226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 115..379 | 17..283 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:48 Download gff for
FMO05226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18951239..18951346 | 174..283 | 97 | <- | Minus |
| 2L | 18951407..18951537 | 43..173 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:37 Download gff for
FMO05226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18951239..18951346 | 174..283 | 97 | <- | Minus |
| arm_2L | 18951407..18951537 | 43..173 | 100 | <- | Minus |
