FMO05227.5prime Sequence
548 bp (548 high quality bases) assembled on 2008-08-22
> FMO05227.5prime
GCATACATTATACGAAGTTATCAGTCGACATGCCGTTCATGAAGGGCCGT
GAGCCCATCCGCCGCACCCTGAAGTATCTGAATGCCGGTAAGCTGGTGCT
GAAGGACAAGGTGCGCATTTTCAGCGTGAACTACAACACATATGGTGCTC
ATCACGCGGGCGCTCGGGACTTTGTTTTCTGGAACATACCGCAGATCCAG
TTCAAGAATCCCGAGGTCCAGGTGCTCACGCTGAAGAACATGACGCCCTC
GCCGTTTGTGCGCTGCTACTTCGACGATGGACGCGATATGCTTATAGATT
TGGACAGTCGGAATCGGAACGACATCATCGATCACCTGGTTAAGGTGGTG
GGCAAAACCCGGGAGCAACTGGACGCAGAGGAGCGCCTAAAGGAGAGCAA
GGACAATCCGGCCAACTTTGGCTACGGATGCGGCAGGCACTGCATCTGCG
AGATCCCCGGCCAGGTGCCCTGTCCCGGAACCGTGCCGCTGCCCGATCAC
ATGCGCGGCAAGATCTTGTTCGCACCCAAAGCAAGCTTTCTAGACCAT
FMO05227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS25-RA | 641 | CG14413-RA | 90..590 | 30..530 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14582498..14582694 | 362..166 | 985 | 100 | Minus |
| X | 23542271 | X | 14582187..14582356 | 530..361 | 850 | 100 | Minus |
| X | 23542271 | X | 14582756..14582893 | 167..30 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:20 has no hits.
FMO05227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:02 Download gff for
FMO05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS25-RA | 77..590 | 18..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:39 Download gff for
FMO05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS25-RA | 1..504 | 30..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:53 Download gff for
FMO05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS25-RA | 77..590 | 18..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:53 Download gff for
FMO05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14582757..14582906 | 18..166 | 96 | | Minus |
| X | 14582187..14582355 | 362..530 | 100 | <- | Minus |
| X | 14582499..14582693 | 167..361 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:02 Download gff for
FMO05227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14476220..14476388 | 362..530 | 100 | <- | Minus |
| arm_X | 14476532..14476726 | 167..361 | 100 | <- | Minus |
| arm_X | 14476790..14476939 | 18..166 | 96 | | Minus |
