FMO05229.5prime Sequence
1259 bp (1029 high quality bases) assembled on 2008-08-22
> FMO05229.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATCTGCGA
AGGTGGTTTCCGACCTTGTACACCCAGTCGAAGGATTCGCCAGTTCGCTC
CCGAGACGCGACCCTGTACCTCCTACGCTGCGTCTTCTTAATGGGCGTCC
GCAAGCCACCTGCCAAGTTTTTCGTGGCCTACGTGCTCTGGTCCTTCGCA
CTGAATTTCTGCTCAACATTTTATCAGCCAATTGGCTTTCTCACAGGCTA
TATAAGCCATTTATCAGAGTTCTCCCCGGGAGAGTTTCTAACTTCGCTGC
AGGTGGCCTTTAATGCTTGGTCCTGCTCTACAAAAGTCCTGATAGTGTGG
GCACTAGTTAAGCGCTTTGACGAGGCTAATAACCTTCTCGACGAGATGGA
TAGGCGTATCACAGACCCCGGAGAGCGTCTTCAGATTCATCGCGCTGTCT
CCCTCAGTAACCGTATATTCTTCTTTTTCATGGCAGTCTACATGGTTTAT
GCCACTAATACGTTTCTGTCGGCGATCTTCATTGGAAGGCCACCGTACCA
AAATTACTACCCTTTTCTGGACTGGCGATCTAGCACTCTGCATCTAGCTC
TGCAGGCCGGTCTGGAATACTTCGCCATGGCTGGCGCCTGCTTCCAGGAC
GTTTGCGTTGATTGCTACCCAGTCAATTTCGTTTTGGTCCTGCGTGCCCA
CATGTCGATCTTCGCGGAGCGCCTTCGACGTTTGGGAACTTATCCTTATG
AAAGCCAGGAGCAGAAATATGAACGATTGGTTCAGTGCATACAAGATCAC
AAAGTAATTTTGCGATTTGTTGACTGCCTGCGTCCTGTTATTTCTGGTAC
CATCTCGTGCATTCTGGGTTGTGGGTTGGTGCTGGGCTTTACCCTAATTA
ACATTGTCCTGTTCGCCACTTGGGATCGGGCATCGCAGCGCTCTCGTTAT
TGCCGCAGTGCTTCAGAGACGACTCCTTCTGCATATTGTGGCATTATCTC
ACAGAGACTGCTACAGCTGGCCGATGCCTGTTTCATCAACTTGATGATGA
GGAAAACGATACCAAGACACTCATGTACTTCTACGAACTGCACCAGCTTT
ACCTTCATGCATGACCTGTTTCCAATTCTGGGGAACTAACATCAGTTCAA
TTTCTTCCGCCTTAACTTGTGAACAAGTACATTCTGAACTTGCAACTTGA
AGTGAAAGACGCACTTCTGTAGATAGACACTTTCGTTTGGGGCCGGCGGC
CGGTTGATG
FMO05229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or42a-RA | 1280 | CG17250-RA | 5..1138 | 39..1146 | 4895 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5792188..5792963 | 814..39 | 3880 | 100 | Minus |
| 2R | 25286936 | 2R | 5791780..5792003 | 1028..814 | 595 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:59:56 has no hits.
FMO05229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:50 Download gff for
FMO05229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 2..1142 | 37..1149 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:43 Download gff for
FMO05229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 1..1138 | 39..1149 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:16 Download gff for
FMO05229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or42a-RA | 2..1142 | 37..1149 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:16 Download gff for
FMO05229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5792188..5792975 | 21..814 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:50 Download gff for
FMO05229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1679693..1680480 | 21..814 | 98 | <- | Minus |
