FMO05230.5prime Sequence
1234 bp (1057 high quality bases) assembled on 2008-08-22
> FMO05230.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTTGAAGACATT
CAGCTAATCTACATGAATATCAAGATATTGCGATTCTGGGCCCTGCTCTA
TGACAAAAACTTGAGGCGTTATGTGTGCATTGGACTGGCCTCATTCCACA
TCTTCACCCAAATCGTCTACATGATGAGTACCAATGAAGGACTAACCGGG
ATAATTCGTAACTCATATATGCTCGTCCTTTGGATTAATACGGTGCTGCG
AGCTTATCTCTTGCTGGCGGATCACGACAGATATTTGGCTTTGATCCAAA
AACTAACTGAGGCCTATTACGATTTACTGAATCTGAACGATTCGTATATA
TCGGAAATATTGGACCAGGTGAACAAGGTGGGAAAGTTGATGGCTAGGGG
CAATCTGTTCTTTGGCATGCTCACATCCATGGGATTCGGTCTGTACCCAT
TGTCCTCCAGCGAAAGAGTCCTGCCATTTGGCAGCAAAATTCCTGGTCTA
AATGAGTACGAGAGTCCGTACTATGAGATGTGGTACATCTTTCAGATGCT
CATCACCCCGATGGGCTGTTGCATGTACATTCCGTACACCAGTCTGATTG
TGGGCTTGATAATGTTCGGCATTGTGAGGTGCAAGGCTTTGCAGCATCGC
CTCCGCCAGGTGGCGCTTAAGCATCCGTACGGAGATCGCGATCCCCGTGA
ACTGAGGGAGGAGATCATAGCCTGCATACGTTACCAGCAGAGCATTATCG
AGTACATGGATCACATAAACGAGCTGACCACCATGATGTTCCTATTCGAA
CTGATGGCCTTTTCGGCGCTGCTCTGTGCGCTGCTCTTTATGCTGATTAT
CGTCAGCGGCACCAGTCAGCTGATAATTGTTTGCATGTACATTAACATGA
TTCTGGCCAAATACTGGCCCTCTATGGTATGCAAATGAGTTAAGGAACAG
AATCTGGCGGTGCCACGCAGCTACGAAACGGAGTGTTCACTTCGACGTTC
CACTGCGCAAAACATCTGTTCATGATGATGAGGCCAGCGGCAGCTGCATA
CTACTGGGCAATAACGCCCCATCCTTGACTGTTCAAACCTCTGAACAACT
TACATTTTACTGTTCTCAAGCGAGTCTCACAGACAGCTTCTAGACATCGT
GGGCGCGGCAGGTAATGGCTATCTAACTAATCTATCTATCACCATGCTAG
AATCTGCTAGACATAGTGCTGTGATCTCACACAT
FMO05230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or49b-RA | 1739 | CG17584-RA | 474..1594 | 35..1127 | 4930 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12843138..12843571 | 35..468 | 2170 | 100 | Plus |
| 2R | 25286936 | 2R | 12843674..12844060 | 467..853 | 1935 | 100 | Plus |
| 2R | 25286936 | 2R | 12844121..12844312 | 852..1033 | 465 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:02:08 has no hits.
FMO05230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:29 Download gff for
FMO05230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or49b-RA | 463..1516 | 21..1063 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:15:44 Download gff for
FMO05230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or49b-RA | 463..1516 | 21..1063 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:47 Download gff for
FMO05230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or49b-RA | 463..1516 | 21..1063 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:47 Download gff for
FMO05230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12843127..12843571 | 21..468 | 99 | -> | Plus |
| 2R | 12843676..12844058 | 469..851 | 100 | -> | Plus |
| 2R | 12844121..12844330 | 852..1047 | 93 | -> | Plus |
| 2R | 12844466..12844481 | 1048..1063 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:29 Download gff for
FMO05230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8730632..8731076 | 21..468 | 99 | -> | Plus |
| arm_2R | 8731181..8731563 | 469..851 | 100 | -> | Plus |
| arm_2R | 8731626..8731835 | 852..1047 | 93 | -> | Plus |
| arm_2R | 8731971..8731986 | 1048..1063 | 100 | == | Plus |
